Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-201 706.4 343 100.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 5.6e-171 604.4 341 86.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-170 603.2 344 85.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.2e-168 596.7 340 84.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 4.9e-167 591.3 343 84.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 3.5e-165 585.1 345 83.2
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.3e-164 583.2 342 84.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 5.0e-164 581.3 342 83.6
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 6.6e-164 580.9 344 82.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 6.6e-164 580.9 347 80.4
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.5e-163 578.9 343 85.4
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.3e-163 578.6 341 81.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.6e-162 576.2 332 83.1
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.6e-162 576.2 344 82.0
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.7e-162 574.7 343 80.5
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.0e-162 573.9 321 86.0
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.1e-161 573.5 343 82.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.0e-161 571.6 338 81.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.0e-161 571.6 344 81.7
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 6.8e-161 570.9 338 80.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.9e-161 570.5 338 82.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.9e-161 570.5 350 80.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.5e-160 569.7 343 79.9
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.5e-160 569.7 342 80.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 3.4e-160 568.5 344 79.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 5.8e-160 567.8 343 79.6
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 5.8e-160 567.8 344 80.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.7e-159 566.2 343 81.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.2e-159 565.8 346 80.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.4e-158 563.1 334 82.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.4e-158 561.2 335 81.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 9.2e-158 560.5 343 79.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.1e-157 559.3 343 77.8
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.1e-157 559.3 310 86.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.5e-157 558.5 345 78.0
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 4.6e-157 558.1 343 82.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 6.0e-157 557.8 343 77.6
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 6.0e-157 557.8 343 77.6
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 6.0e-157 557.8 338 79.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.0e-156 557.0 343 77.6
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.0e-156 557.0 348 79.9
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.0e-156 555.4 354 77.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.0e-156 555.4 343 77.8
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.1e-156 554.7 344 78.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 6.6e-156 554.3 335 79.4
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 8.6e-156 553.9 343 77.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 8.6e-156 553.9 343 77.3
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 8.6e-156 553.9 342 79.2
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.5e-155 552.4 330 79.7
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 4.3e-155 551.6 342 78.1
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 4.3e-155 551.6 343 77.0
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.6e-155 551.2 334 80.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.3e-155 550.8 341 79.8
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.5e-155 550.4 342 78.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.2e-154 550.1 343 77.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.1e-154 549.3 344 79.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.1e-154 549.3 345 79.1
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.8e-154 548.9 336 80.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.6e-154 548.5 341 78.9
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.6e-154 548.5 342 78.9
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.7e-154 548.1 347 77.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-153 547.0 361 74.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.3e-153 545.8 342 76.3
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.3e-153 545.8 326 79.4
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.1e-153 545.4 343 77.6
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 5.2e-153 544.7 326 79.1
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.2e-153 544.7 334 79.3
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.8e-153 544.3 345 78.3
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 6.8e-153 544.3 338 78.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.2e-152 543.5 343 77.8
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.2e-152 543.5 342 78.4
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 9.9e-152 540.4 323 78.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.3e-151 540.0 344 77.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.7e-151 539.7 341 74.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 4.9e-151 538.1 337 77.4
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.6e-149 533.1 343 78.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.7e-149 532.3 355 72.4
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.5e-149 531.9 334 77.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 8.6e-148 527.3 327 76.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 8.6e-148 527.3 354 72.6
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.5e-147 526.6 333 76.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.9e-147 526.2 333 76.6
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.5e-147 525.8 333 76.6
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.7e-146 521.5 334 77.2
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.2e-146 521.2 334 77.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.8e-145 519.6 310 77.1
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.9e-145 517.3 380 68.7
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.4e-144 515.4 340 74.1
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 7.6e-144 514.2 354 74.3
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 7.6e-144 514.2 337 75.7
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.9e-144 513.8 343 74.1
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.3e-143 513.5 344 73.5
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 4.9e-143 511.5 335 73.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.4e-143 511.1 340 73.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.4e-142 509.2 306 82.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.4e-142 508.1 327 77.1
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 7.8e-141 504.2 341 73.0
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.2e-138 496.9 320 76.9
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.6e-138 496.5 333 74.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.8e-138 495.7 315 73.7
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.2e-138 494.6 299 79.3
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.4e-137 492.7 336 69.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 3.4e-136 488.8 308 74.0
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 6.4e-135 484.6 342 71.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.5e-133 478.8 343 70.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.3e-132 476.9 336 70.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-132 476.1 315 73.7
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.0e-132 475.7 356 68.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.5e-131 472.6 364 64.8
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.3e-131 471.1 266 84.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.8e-130 468.4 307 71.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.5e-128 463.4 322 71.7
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.7e-127 459.9 344 64.8
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.5e-125 452.2 263 82.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.5e-123 446.0 322 65.2
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.3e-123 445.3 283 74.6
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-122 443.7 310 66.8
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.2e-122 441.4 290 73.8
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.1e-121 439.1 340 63.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 4.0e-121 438.7 247 85.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 9.3e-118 427.6 311 66.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.8e-113 413.3 312 63.8
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.0e-112 409.8 314 62.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.6e-112 409.5 396 55.3
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 5.8e-112 408.3 287 70.0
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 8.5e-103 377.9 222 81.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.3e-100 369.8 255 69.4
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.3e-98 364.0 303 60.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.2e-96 357.5 244 69.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.5e-94 349.7 233 67.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.9e-84 315.8 235 64.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 5.2e-84 315.5 315 51.4
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.3e-79 300.8 304 52.0
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-75 287.7 268 56.3
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 3.5e-72 276.2 176 76.1
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.5e-72 276.2 169 78.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.7e-64 250.0 182 68.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.8e-61 240.0 142 79.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 5.4e-57 225.7 130 80.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.3e-50 204.5 125 76.0
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.2e-35 154.8 90 80.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 8.3e-34 148.7 171 51.5
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-26 124.0 75 69.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-22 111.7 64 81.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.1e-22 111.7 79 73.4
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.3e-22 109.8 66 74.2
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 7.3e-22 109.0 70 74.3
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.1e-20 105.1 163 41.1
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.1e-16 90.9 55 76.4
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.7e-15 87.8 76 59.2
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.4e-11 73.6 41 78.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.3e-10 71.6 201 27.4
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.1e-09 68.6 201 29.4
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.1e-09 68.6 95 35.8
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.6e-08 63.2 172 28.5
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 3.0e-07 60.5 213 25.8
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 8.7e-07 58.9 77 45.5
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.5e-06 58.2 180 28.9
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 1.5e-06 58.2 214 25.2
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 1.9e-06 57.8 156 26.9
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.9e-06 57.8 154 30.5
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 1.9e-06 57.8 212 25.5
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 28.1
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 5.6e-06 56.2 154 29.2
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 5.6e-06 56.2 209 23.9
A01p26970 Brassica napus HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 26.8
BraA01t02832Z Brassica rapa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 26.8
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 28.8
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 7.4e-06 55.8 152 28.9
BcaC09g49622 Brassica carinata HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 26.8
C01p34390 Brassica napus HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 26.8
BolC1t03409H Brassica oleracea HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 26.8
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 29.4
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 28.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 28.8


User provided reference genes

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