Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p050748 Quercus lobata HOM05D007740 ORTHO05D009757 2.1e-211 738.8 375 100.0
Haze_04506 Corylus avellana HOM05D007740 ORTHO05D009757 2.5e-92 343.2 290 66.2
Dinv07878 Davidia involucrata HOM05D007740 ORTHO05D009757 6.1e-54 215.7 364 42.3
Manes.08G105300 Manihot esculenta HOM05D007740 ORTHO05D009757 1.2e-41 174.9 403 36.5
Prupe.6G357700 Prunus persica HOM05D007740 ORTHO05D009757 4.1e-34 149.8 345 37.1
Manes.09G183401 Manihot esculenta HOM05D007740 ORTHO05D009757 2.2e-32 144.1 235 42.6
Prupe.6G357400 Prunus persica HOM05D007740 ORTHO05D009757 2.2e-32 144.1 369 35.8
TAR636G3457 Trochodendron aralioides HOM05D007740 ORTHO05D009757 2.9e-32 143.7 365 34.5
Lj2A52T86 Lonicera japonica HOM05D007740 ORTHO05D009757 8.6e-24 115.5 439 29.6
CANSAT54G0973 Cannabis sativa HOM05D007740 ORTHO05D009757 3.3e-23 113.6 378 30.2
Nn1g03145 Nelumbo nucifera HOM05D007740 ORTHO05D009757 4.2e-23 113.2 355 29.0
MD04G1239500 Malus domestica HOM05D007740 ORTHO05D009757 2.8e-22 110.5 337 31.8
RcHm_v2.0_Chr3g0448441 Rosa chinensis HOM05D007740 ORTHO05D009757 3.6e-22 110.2 343 31.2
Prupe.6G052100 Prunus persica HOM05D007740 ORTHO05D009757 5.2e-21 106.3 260 36.9
FAN02G2821 Fragaria x ananassa HOM05D007740 ORTHO05D009757 6.8e-21 105.9 347 30.5
FvH4_6g00980 Fragaria vesca HOM05D007740 ORTHO05D009757 1.3e-19 101.7 347 30.3
FAN05G2333 Fragaria x ananassa HOM05D007740 ORTHO05D009757 1.3e-19 101.7 344 29.7
FAN09G1629 Fragaria x ananassa HOM05D007740 ORTHO05D009757 2.9e-19 100.5 347 30.5
Nn3g19908 Nelumbo nucifera HOM05D007740 ORTHO05D009757 8.3e-19 99.0 354 28.2
FAN14G2516 Fragaria x ananassa HOM05D007740 ORTHO05D009757 4.1e-18 96.7 347 29.7
ATR0787G178 Amborella trichopoda HOM05D007740 ORTHO05D009757 4.0e-13 80.1 313 27.5
MD12G1256600 Malus domestica HOM05D007740 ORTHO05D009757 1.2e-12 78.6 339 29.8
Sopen02g017710 Solanum pennellii HOM05D000104 ORTHO05D006385 1.4e-10 71.6 134 34.3
Nn7g38207 Nelumbo nucifera HOM05D000104 ORTHO05D006385 1.9e-10 71.2 374 28.3
Duzib248G0971 Durio zibethinus HOM05D000104 ORTHO05D006385 2.4e-10 70.9 121 33.9
Lj1g0021758 Lotus japonicus HOM05D007740 ORTHO05D009757 2.4e-10 70.9 360 27.8
Haze_04508 Corylus avellana HOM05D007740 ORTHO05D009757 3.2e-10 70.5 65 61.5
Cfa000689 Carpinus fangiana HOM05D000104 ORTHO05D006385 5.4e-10 69.7 398 25.1
RcHm_v2.0_Chr5g0020581 Rosa chinensis HOM05D000104 ORTHO05D006385 7.0e-10 69.3 248 29.0
FAN21G0261 Fragaria x ananassa HOM05D000104 ORTHO05D006385 9.2e-10 68.9 214 30.4
Peaxi162Scf00199g00049 Petunia axillaris HOM05D000104 ORTHO05D006385 9.2e-10 68.9 186 32.3
Solyc02g068560.3 Solanum lycopersicum HOM05D000104 ORTHO05D006385 1.6e-09 68.2 134 33.6
DCAR_003772 Daucus carota HOM05D000104 ORTHO05D006385 2.0e-09 67.8 132 37.1
Ciclev10014010m.g Citrus clementina HOM05D000104 ORTHO05D006385 2.7e-09 67.4 100 39.0
Sc17g0004230 Simmondsia chinensis HOM05D000104 ORTHO05D006385 2.7e-09 67.4 303 27.7
FvH4_3g12610 Fragaria vesca HOM05D000104 ORTHO05D006385 4.6e-09 66.6 216 27.8
Gohir.D12G046800 Gossypium hirsutum HOM05D000104 ORTHO05D006385 6.0e-09 66.2 108 36.1
Gorai.008G049300 Gossypium raimondii HOM05D000104 ORTHO05D006385 6.0e-09 66.2 108 36.1
Glyma.05G131500 Glycine max HOM05D000104 ORTHO05D006385 7.8e-09 65.9 323 25.4
MBI07_g22396_MAGBIO Magnolia biondii HOM05D007740 ORTHO05D009757 7.8e-09 65.9 369 25.5
QL11p013542 Quercus lobata HOM05D000104 ORTHO05D006385 7.8e-09 65.9 401 25.2
FAN25G1943 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.0e-08 65.5 209 28.7
Gohir.A12G048001 Gossypium hirsutum HOM05D000104 ORTHO05D006385 1.7e-08 64.7 108 37.0
MD10G1229800 Malus domestica HOM05D000104 ORTHO05D006385 1.7e-08 64.7 247 27.9
CARHR178070 Cardamine hirsuta HOM05D000104 ORTHO05D006385 3.0e-08 63.9 121 35.5
MD05G1249300 Malus domestica HOM05D000104 ORTHO05D006385 3.0e-08 63.9 254 26.4
Prupe.3G301900 Prunus persica HOM05D007740 ORTHO05D009757 3.0e-08 63.9 192 31.8
Haze_06104 Corylus avellana HOM05D000104 ORTHO05D006385 3.9e-08 63.5 367 26.2
Thhalv10000738m.g Eutrema salsugineum HOM05D000104 ORTHO05D006385 3.9e-08 63.5 95 40.0
Sp2g09650 Schrenkiella parvula HOM05D000104 ORTHO05D006385 3.9e-08 63.5 210 29.5
ClCG01G025670 Citrullus lanatus HOM05D000104 ORTHO05D006385 5.0e-08 63.2 100 38.0
TWI38G1081 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 5.0e-08 63.2 285 26.0
CsaV3_6G052880 Cucumis sativus L. HOM05D000104 ORTHO05D006385 6.6e-08 62.8 110 37.3
EL10Ac7g17247 Beta vulgaris HOM05D000104 ORTHO05D006385 8.6e-08 62.4 212 31.6
CAN.G149.4 Capsicum annuum HOM05D000104 ORTHO05D006385 8.6e-08 62.4 106 36.8
Psat7g089160 Pisum sativum HOM05D000104 ORTHO05D006385 8.6e-08 62.4 244 25.4
Ah.08g212330 Amaranthus hybridus HOM05D000104 ORTHO05D006385 1.1e-07 62.0 65 41.5
Cpa.g.sc30.142 Carica papaya HOM05D000104 ORTHO05D006385 1.1e-07 62.0 300 26.7
PSO675G2846 Papaver somniferum HOM05D000104 ORTHO05D006385 1.5e-07 61.6 128 35.2
Glyma.08G086100 Glycine max HOM05D000104 ORTHO05D006385 1.9e-07 61.2 360 25.0
SEGI_40217 Sequoiadendron giganteum HOM05D000104 ORTHO05D006385 1.9e-07 61.2 153 30.7
THA.LOC104806217 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 1.9e-07 61.2 103 34.0
CANSAT35G1593 Cannabis sativa HOM05D000104 ORTHO05D006385 2.5e-07 60.8 196 31.6
Migut.E01638 Erythranthe guttata HOM05D000104 ORTHO05D006385 2.5e-07 60.8 135 35.6
Thecc.02G006500 Theobroma cacao HOM05D000104 ORTHO05D006385 2.5e-07 60.8 379 25.3
CiPaw.09G075000 Carya illinoinensis HOM05D000104 ORTHO05D006385 3.3e-07 60.5 389 26.7
MELO3C007018.2 Cucumis melo HOM05D000104 ORTHO05D006385 3.3e-07 60.5 110 37.3
Medtr4g096930 Medicago truncatula HOM05D000104 ORTHO05D006385 3.3e-07 60.5 62 43.5
PSO541G6099 Papaver somniferum HOM05D000104 ORTHO05D006385 3.3e-07 60.5 128 35.2
CSS0032749 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D006385 5.6e-07 59.7 136 29.4
Psat3g105360 Pisum sativum HOM05D007740 ORTHO05D009757 5.6e-07 59.7 356 23.9
GSVIVG01012117001 Vitis vinifera HOM05D000104 ORTHO05D006385 5.6e-07 59.7 272 25.0
arahy.Tifrunner.gnm1.ann1.VH4LBD Arachis hypogaea HOM05D000104 ORTHO05D006385 7.3e-07 59.3 104 35.6
Prupe.4G114900 Prunus persica HOM05D000104 ORTHO05D006385 7.3e-07 59.3 253 25.7
Migut.E00892 Erythranthe guttata HOM05D000104 ORTHO05D006385 9.5e-07 58.9 125 35.2
MBI18_g05699_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006385 9.5e-07 58.9 322 26.4
AT5G44800 Arabidopsis thaliana HOM05D000104 ORTHO05D006385 1.2e-06 58.5 289 26.0
arahy.Tifrunner.gnm1.ann1.AWTX9V Arachis hypogaea HOM05D000104 ORTHO05D006385 1.2e-06 58.5 104 35.6
DCAR_000407 Daucus carota HOM05D001312 ORTHO05D006385 1.2e-06 58.5 281 26.3
AUR62040328 Chenopodium quinoa HOM05D000104 ORTHO05D006385 1.6e-06 58.2 218 26.1
Aa31LG9G8370 Aethionema arabicum HOM05D000104 ORTHO05D006385 2.1e-06 57.8 57 45.6
SGA_v2.0_scaffold341G49372 Striga asiatica HOM05D000104 ORTHO05D006385 2.1e-06 57.8 68 39.7
TAR626G0969 Trochodendron aralioides HOM05D000104 ORTHO05D006385 2.1e-06 57.8 365 25.8
ECA246G5074 Erigeron canadensis HOM05D000104 ORTHO05D006385 2.8e-06 57.4 176 33.0
Oeu056048.2 Olea europaea HOM05D000104 ORTHO05D006385 2.8e-06 57.4 151 31.8
Phvul.002G191300 Phaseolus vulgaris HOM05D000104 ORTHO05D006385 2.8e-06 57.4 345 24.6
Actinidia33653 Actinidia chinensis HOM05D000104 ORTHO05D006385 3.6e-06 57.0 316 26.6
THA.LOC104811657 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 3.6e-06 57.0 164 29.9
Potri.003G110100 Populus trichocarpa HOM05D000104 ORTHO05D006385 4.7e-06 56.6 194 27.3
Atru.chr10.480 Acer truncatum HOM05D000104 ORTHO05D006385 6.2e-06 56.2 66 43.9
Nitab4.5_0000443g0050 Nicotiana tabacum HOM05D007740 ORTHO05D006385 6.2e-06 56.2 156 32.7
A09p21350 Brassica napus HOM05D000104 ORTHO05D006385 8.1e-06 55.8 118 36.4
BraA09t37740Z Brassica rapa HOM05D000104 ORTHO05D006385 8.1e-06 55.8 118 36.4
Lsat_1_v5_gn_4_139440 Lactuca sativa HOM05D000104 ORTHO05D006385 8.1e-06 55.8 158 30.4
Nitab4.5_0006786g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006385 8.1e-06 55.8 156 32.7


User provided reference genes

Program Settings