Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 4.9e-140 501.1 256 100.0
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 8.2e-135 483.8 255 96.9
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 3.3e-83 312.4 246 68.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.4e-81 307.0 248 66.9
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.4e-80 302.4 257 65.8
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 2.9e-79 299.3 248 66.5
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 3.7e-79 298.9 247 65.6
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.4e-78 296.2 256 65.2
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 3.2e-78 295.8 250 65.6
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 5.4e-78 295.0 246 64.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 9.2e-78 294.3 245 64.5
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 9.2e-78 294.3 244 66.0
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.0e-77 293.1 249 64.7
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.0e-77 293.1 249 64.7
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 2.0e-77 293.1 245 65.3
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.5e-77 292.4 254 65.0
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 6.0e-77 291.6 254 64.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 6.0e-77 291.6 270 62.2
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.0e-76 290.8 247 64.8
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 1.3e-76 290.4 246 64.2
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.7e-76 290.0 246 65.0
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.3e-76 289.7 246 65.9
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 3.9e-76 288.9 253 62.1
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 5.0e-76 288.5 248 64.1
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 5.0e-76 288.5 249 63.9
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 8.6e-76 287.7 248 64.5
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.1e-75 287.3 245 63.7
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.1e-75 287.3 256 63.3
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.3e-75 285.8 252 63.1
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 7.3e-75 284.6 253 61.3
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 4.7e-74 282.0 258 62.4
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.1e-73 280.8 248 62.1
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.1e-73 280.8 250 61.6
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 1.4e-73 280.4 246 61.8
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.8e-73 280.0 244 63.1
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 1.8e-73 280.0 144 95.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.3e-73 279.6 246 61.8
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.1e-73 279.3 244 62.7
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 8.9e-73 277.7 245 62.4
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.2e-72 277.3 244 63.1
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.5e-72 276.9 246 63.8
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.5e-72 276.9 248 60.9
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.5e-72 276.9 253 61.7
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 2.0e-72 276.6 248 60.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 2.0e-72 276.6 247 62.3
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 3.4e-72 275.8 245 61.6
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 3.4e-72 275.8 246 60.6
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 5.8e-72 275.0 255 60.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.8e-72 275.0 243 61.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.8e-72 275.0 243 61.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.3e-71 273.9 243 60.9
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 2.9e-71 272.7 244 62.7
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 3.7e-71 272.3 244 62.3
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 8.3e-71 271.2 247 60.3
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.1e-70 270.8 249 60.6
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 3.2e-70 269.2 244 60.2
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 4.1e-70 268.9 245 61.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 5.4e-70 268.5 243 62.1
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 7.0e-70 268.1 256 59.0
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 3.5e-69 265.8 233 62.2
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 6.0e-69 265.0 249 60.2
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 7.8e-69 264.6 246 61.0
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 2.3e-68 263.1 244 59.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 3.0e-68 262.7 245 59.2
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 3.9e-68 262.3 247 61.1
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.9e-68 262.3 245 58.4
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 5.1e-68 261.9 245 59.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 6.6e-68 261.5 233 61.4
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 1.1e-67 260.8 245 58.8
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 1.1e-67 260.8 245 58.8
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.9e-67 260.0 243 59.3
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.9e-67 260.0 255 58.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.5e-67 259.6 247 59.5
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 3.3e-67 259.2 245 59.2
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 3.3e-67 259.2 244 58.6
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 3.3e-67 259.2 245 59.2
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 3.3e-67 259.2 254 59.1
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 4.3e-67 258.8 253 58.1
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 7.3e-67 258.1 244 58.6
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 7.3e-67 258.1 245 58.4
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.6e-66 256.9 244 58.2
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.6e-66 255.8 245 58.0
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 6.2e-66 255.0 254 58.7
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 6.8e-65 251.5 247 57.9
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.3e-63 247.3 245 57.1
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 5.4e-62 241.9 257 56.4
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 7.1e-62 241.5 244 58.2
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.6e-61 240.4 219 61.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.5e-59 233.8 242 53.3
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.4e-54 217.2 221 54.8
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 5.4e-54 215.3 242 51.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.2e-54 214.5 243 53.5
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 2.1e-53 213.4 242 51.7
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.9e-52 209.1 206 56.8
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 4.7e-50 202.2 244 50.8
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 2.4e-49 199.9 245 49.4
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.4e-49 199.9 243 50.2
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.9e-49 198.4 216 53.7
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 4.4e-48 195.7 286 47.2
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 7.6e-48 194.9 191 57.1
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.2e-45 187.6 188 58.0
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 4.5e-40 169.1 183 56.3
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 7.6e-40 168.3 165 58.8
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.2e-39 166.8 198 51.5
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 4.9e-39 165.6 100 81.0
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 3.5e-37 159.5 170 53.5
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 4.6e-37 159.1 164 55.5
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.5e-35 154.1 194 49.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 8.1e-34 148.3 201 48.8
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 2.4e-33 146.7 252 39.3
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 1.2e-32 144.4 113 68.1
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 1.4e-30 137.5 84 81.0
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 2.5e-30 136.7 254 39.8
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 2.2e-23 113.6 108 61.1
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 3.2e-22 109.8 94 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 1.2e-21 107.8 192 38.5
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-17 94.7 74 62.2
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 4.5e-16 89.4 110 51.8
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 7.7e-16 88.6 249 30.9
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.2e-14 82.8 74 56.8
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 4.6e-13 79.3 52 71.2
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 3.1e-09 66.6 51 64.7
LjContig00564g0014639 Lotus japonicus HOM05D002009 ORTHO05D030873 5.5e-06 55.8 35 74.3
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.5e-06 55.8 47 53.2


User provided reference genes

Program Settings