Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.0e-159 565.8 475 100.0
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.3e-98 363.6 374 66.6
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 4.9e-93 345.9 364 65.9
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.4e-92 344.4 373 70.0
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.4e-92 344.4 372 65.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 2.7e-91 340.1 364 56.6
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.5e-91 339.7 367 63.8
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 4.6e-91 339.3 365 64.7
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.3e-90 337.8 372 65.6
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.8e-90 337.4 362 62.4
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 3.0e-90 336.7 371 65.2
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.9e-90 336.3 364 63.7
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 8.7e-90 335.1 361 64.8
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.3e-89 333.2 367 59.7
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.6e-89 332.4 329 62.6
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 5.6e-89 332.4 386 61.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.6e-88 330.9 369 69.6
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 8.2e-88 328.6 363 62.0
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.1e-87 328.2 366 65.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.1e-87 328.2 362 63.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.0e-87 326.2 368 70.7
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 5.3e-87 325.9 360 65.8
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 6.9e-87 325.5 362 67.7
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 6.9e-87 325.5 369 60.7
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 3.4e-86 323.2 368 65.8
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 4.5e-86 322.8 370 67.3
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.8e-86 322.4 361 61.2
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 2.9e-85 320.1 368 66.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.8e-85 319.7 363 67.2
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.9e-84 317.4 362 62.2
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 4.2e-84 316.2 366 59.3
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 7.1e-84 315.5 371 59.6
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.3e-84 315.1 356 55.9
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 6.0e-83 312.4 382 61.5
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.3e-82 310.5 364 59.9
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.5e-81 307.8 384 61.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.9e-81 307.4 369 57.2
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.3e-81 306.6 364 53.0
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.7e-81 305.8 368 72.8
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.7e-81 305.8 368 72.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 9.7e-81 305.1 374 67.6
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.6e-80 304.3 361 52.4
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.6e-80 304.3 369 60.2
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.8e-80 303.5 382 56.8
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 6.3e-80 302.4 322 70.2
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 8.2e-80 302.0 369 53.9
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 3.1e-79 300.1 384 59.4
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.0e-79 298.5 362 57.2
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.5e-78 297.7 370 63.2
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 5.9e-78 295.8 364 60.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 5.9e-78 295.8 366 65.8
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 3.8e-77 293.1 367 58.0
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 5.0e-77 292.7 390 57.9
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 8.5e-77 292.0 363 60.3
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.1e-76 291.6 364 54.1
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.4e-76 291.2 351 62.1
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 3.2e-76 290.0 392 57.7
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 7.2e-76 288.9 362 56.6
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 9.3e-76 288.5 363 62.5
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.2e-75 288.1 361 60.4
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 1.0e-74 285.0 387 50.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.0e-74 285.0 267 61.0
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 8.8e-74 282.0 360 60.8
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.1e-73 281.6 368 58.7
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.9e-73 280.8 377 57.0
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.9e-73 280.8 374 52.4
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 4.3e-73 279.6 373 51.5
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 5.7e-73 279.3 323 58.8
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 5.7e-73 279.3 262 68.3
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.7e-73 279.3 406 52.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.4e-73 278.9 364 66.2
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.3e-72 278.1 376 52.1
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.7e-72 277.7 358 56.7
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 3.7e-72 276.6 376 51.6
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.1e-71 275.0 361 60.1
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.4e-71 274.6 361 57.9
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.8e-71 274.2 372 63.4
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.1e-71 273.5 386 54.7
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 3.1e-71 273.5 383 52.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.1e-71 273.1 372 53.8
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.3e-71 272.7 365 64.9
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 5.3e-71 272.7 379 49.1
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 9.1e-71 271.9 373 63.5
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.5e-70 271.2 361 50.1
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.0e-70 270.8 366 64.5
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 4.5e-70 269.6 374 62.8
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.3e-69 268.1 363 54.8
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.7e-69 267.7 178 80.3
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.7e-69 267.7 375 62.1
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.2e-69 267.3 369 51.2
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 6.5e-69 265.8 365 54.0
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.5e-69 265.8 371 48.8
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.4e-68 264.6 374 63.4
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 3.2e-68 263.5 372 50.5
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 7.2e-68 262.3 362 59.9
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 9.4e-68 261.9 364 59.1
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-67 261.5 373 52.0
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.1e-67 260.8 347 62.2
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 3.6e-67 260.0 373 55.0
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.7e-67 259.6 352 56.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 4.7e-67 259.6 366 59.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 7.9e-67 258.8 368 52.2
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.4e-66 258.1 364 61.3
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.4e-66 258.1 364 61.3
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.8e-66 257.7 366 55.5
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.8e-66 257.7 413 54.2
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 3.9e-66 256.5 203 70.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 5.1e-66 256.1 406 47.0
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 1.1e-65 255.0 256 63.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.4e-65 252.3 258 60.5
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.7e-64 251.1 331 54.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.2e-64 250.8 369 59.9
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.4e-63 247.3 356 53.7
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.2e-62 245.0 383 53.5
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 7.7e-62 242.3 352 51.1
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 7.7e-62 242.3 363 53.7
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.3e-61 241.5 259 59.5
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.2e-61 240.7 326 51.5
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 5.0e-61 239.6 164 70.7
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.4e-60 238.0 220 61.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.4e-60 238.0 371 59.3
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.2e-60 236.9 367 59.7
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.1e-59 234.2 338 51.8
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.8e-58 231.1 368 57.6
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.3e-58 230.7 372 58.1
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.1e-57 228.4 401 51.4
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.3e-56 224.9 388 45.6
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.3e-56 224.9 373 57.6
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.8e-56 223.8 376 53.7
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.4e-55 221.5 359 47.9
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.8e-55 221.1 373 57.1
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.8e-53 213.4 338 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.6e-51 208.0 162 68.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.5e-49 201.4 157 71.3
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 7.7e-46 189.1 130 69.2
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.0e-45 188.7 111 74.8
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 2.2e-45 187.6 312 45.2
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 9.4e-44 182.2 316 40.2
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.1e-43 181.0 257 55.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 5.2e-42 176.4 253 56.9
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 3.8e-37 160.2 290 49.0
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 6.1e-35 152.9 263 43.0
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.4e-33 147.1 82 80.5
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 4.3e-28 130.2 300 38.7
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-26 124.8 171 48.0
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 5.2e-26 123.2 175 46.3
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 6.0e-22 109.8 164 50.0
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 2.5e-20 104.4 147 49.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 9.5e-20 102.4 92 45.7
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.4e-18 98.6 235 39.6
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 8.3e-16 89.4 287 29.6
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 7.3e-12 76.3 144 56.9
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 5.8e-09 66.6 93 40.9
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 5.8e-09 66.6 96 41.7
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 1.3e-08 65.5 92 43.5
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 2.2e-08 64.7 93 40.9
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 4.9e-08 63.5 93 39.8
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 6.4e-08 63.2 93 38.7
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 1.4e-07 62.0 93 40.9
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 1.9e-07 61.6 104 39.4
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 3.2e-07 60.8 39 64.1
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 5.4e-07 60.1 93 41.9
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 5.4e-07 60.1 93 43.0
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 5.4e-07 60.1 100 36.0
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 7.1e-07 59.7 93 38.7
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 7.1e-07 59.7 106 40.6
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 9.2e-07 59.3 104 38.5
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.2e-07 59.3 93 37.6
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 1.2e-06 58.9 35 65.7
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.6e-06 58.5 49 53.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 3.5e-06 57.4 40 60.0
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 3.5e-06 57.4 33 66.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 4.6e-06 57.0 35 60.0
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 6.0e-06 56.6 99 36.4
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 6.0e-06 56.6 33 69.7
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 6.0e-06 56.6 40 62.5
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 7.8e-06 56.2 96 36.5
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 7.8e-06 56.2 34 61.8


User provided reference genes

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