Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016023 Quercus lobata HOM05D004419 ORTHO05D005480 3.6e-134 481.5 228 100.0
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 3.7e-94 348.6 182 90.1
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 6.9e-85 317.8 164 89.0
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 6.9e-85 317.8 164 89.0
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 3.4e-84 315.5 169 86.4
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 3.2e-82 308.9 169 84.6
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 3.9e-80 302.0 164 84.1
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 7.4e-79 297.7 163 81.0
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 4.8e-78 295.0 164 82.9
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 6.3e-78 294.7 163 82.8
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 6.3e-78 294.7 185 75.1
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 1.8e-77 293.1 164 81.1
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 3.1e-77 292.4 169 78.7
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 4.1e-77 292.0 169 80.5
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 5.3e-77 291.6 167 80.8
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 5.3e-77 291.6 164 81.1
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 5.3e-77 291.6 163 78.5
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 9.0e-77 290.8 188 73.9
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.2e-76 290.4 178 75.3
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 2.0e-76 289.7 183 73.8
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.6e-76 289.3 164 81.7
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 4.5e-76 288.5 164 79.3
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 4.5e-76 288.5 172 76.2
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.0e-75 287.3 197 69.5
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.0e-75 287.3 163 81.6
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 2.9e-75 285.8 164 81.1
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 3.8e-75 285.4 163 79.8
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 6.5e-75 284.6 209 67.0
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 1.1e-74 283.9 178 73.0
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.4e-74 283.5 164 77.4
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 1.4e-74 283.5 164 78.0
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 1.4e-74 283.5 164 78.0
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 2.5e-74 282.7 164 76.8
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 4.2e-74 282.0 178 74.2
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 5.5e-74 281.6 191 70.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 7.2e-74 281.2 198 68.7
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 7.2e-74 281.2 174 72.4
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 9.4e-74 280.8 164 76.2
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 3.6e-73 278.9 164 77.4
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 4.6e-73 278.5 174 74.7
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 1.0e-72 277.3 206 66.0
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 1.0e-72 277.3 169 76.3
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.4e-72 276.9 183 71.0
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 1.4e-72 276.9 164 76.2
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 1.4e-72 276.9 169 75.1
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.8e-72 276.6 164 78.0
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 6.7e-72 274.6 163 75.5
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 6.7e-72 274.6 160 76.9
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.7e-72 274.6 160 76.9
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.7e-72 274.6 167 75.4
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 8.8e-72 274.2 160 75.6
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 8.8e-72 274.2 199 65.3
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 1.1e-71 273.9 193 66.8
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 2.0e-71 273.1 164 74.4
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.5e-71 272.7 160 76.9
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.5e-71 272.7 160 76.2
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 3.3e-71 272.3 164 74.4
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 4.3e-71 271.9 183 71.0
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 7.4e-71 271.2 163 75.5
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 1.7e-70 270.0 164 73.8
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 2.8e-70 269.2 160 73.1
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 3.7e-70 268.9 164 74.4
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 1.1e-69 267.3 164 72.6
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 1.4e-69 266.9 160 73.1
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 1.8e-69 266.5 164 72.6
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 1.8e-69 266.5 164 72.6
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 1.8e-69 266.5 164 72.6
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 1.8e-69 266.5 191 65.4
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 2.4e-69 266.2 160 74.4
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.4e-69 266.2 166 70.5
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 6.9e-69 264.6 205 65.4
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 2.0e-68 263.1 178 68.5
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 3.4e-68 262.3 164 73.8
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 7.7e-68 261.2 201 64.2
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 2.2e-67 259.6 164 72.6
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 3.8e-67 258.8 162 71.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 3.2e-66 255.8 163 67.5
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 5.5e-66 255.0 157 71.3
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 1.2e-65 253.8 163 70.6
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 4.7e-65 251.9 194 61.9
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 7.9e-65 251.1 196 61.7
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.4e-64 250.4 218 56.9
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 1.5e-63 246.9 163 68.7
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.0e-63 246.5 166 70.5
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 7.4e-63 244.6 222 57.7
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.3e-62 243.8 200 59.5
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.2e-62 243.0 168 68.5
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 7.0e-61 238.0 164 67.7
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 3.8e-59 232.3 194 59.3
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 5.0e-59 231.9 122 84.4
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 7.2e-58 228.0 172 66.3
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 1.4e-56 223.8 178 62.4
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 3.9e-56 222.2 194 56.7
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 1.5e-55 220.3 122 80.3
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 6.3e-54 214.9 197 56.3
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 1.6e-52 210.3 136 69.1
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 5.9e-52 208.4 163 56.4
MELO3C025411.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.2e-51 206.5 119 76.5
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 4.2e-50 202.2 197 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 9.4e-50 201.1 143 62.2
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 1.2e-49 200.7 163 56.4
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 1.4e-48 197.2 166 59.6
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 1.5e-47 193.7 210 49.5
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 2.0e-47 193.4 163 58.3
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 1.1e-45 187.6 145 60.7
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 4.1e-45 185.7 166 55.4
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 4.1e-45 185.7 166 55.4
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 9.1e-45 184.5 166 56.0
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 1.5e-42 177.2 111 72.1
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 9.4e-42 174.5 109 76.1
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 2.1e-41 173.3 116 69.8
CARHR096660 Cardamine hirsuta HOM05D004419 ORTHO05D005480 6.1e-41 171.8 95 78.9
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 6.8e-40 168.3 116 69.0
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 4.4e-39 165.6 168 48.2
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 1.4e-37 160.6 171 44.4
SEGI_06744 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 1.2e-33 147.5 98 68.4
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 3.7e-30 136.0 213 37.6
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 1.3e-27 127.5 74 77.0
PRCOL_00002632 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 1.9e-26 123.6 199 36.2
MD11G1022300 Malus domestica HOM05D004419 ORTHO05D005480 4.3e-26 122.5 93 65.6
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 2.8e-25 119.8 184 36.4
Actinidia06325 Actinidia chinensis HOM05D004419 ORTHO05D005480 6.1e-25 118.6 68 79.4
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 2.9e-22 109.8 67 73.1
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 8.3e-22 108.2 190 33.7
MCO11G675 Micromonas commoda HOM05D004419 ORTHO05D005480 1.1e-21 107.8 220 31.8
CARHR096650 Cardamine hirsuta HOM05D004419 ORTHO05D005480 1.9e-21 107.1 98 54.1
MCO01G020 Micromonas commoda HOM05D004419 ORTHO05D005480 9.2e-21 104.8 174 34.5
Ca_27145_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 3.0e-19 99.8 62 71.0
CAN.G103.12 Capsicum annuum HOM05D004419 ORTHO05D005480 6.6e-19 98.6 83 56.6
CAN.G1385.1 Capsicum annuum HOM05D004419 ORTHO05D005480 2.5e-18 96.7 80 58.8
FAN11G3211 Fragaria x ananassa HOM05D004419 ORTHO05D005480 9.5e-18 94.7 76 59.2
SEGI_22299 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 1.6e-17 94.0 72 59.7
MELO3C027435.2 Cucumis melo HOM05D004419 ORTHO05D005480 3.6e-17 92.8 56 66.1
RcHm_v2.0_Chr5g0078191 Rosa chinensis HOM05D004419 ORTHO05D005480 6.2e-17 92.0 49 77.6
MCO01G585 Micromonas commoda HOM05D004419 ORTHO05D005480 8.1e-17 91.7 218 28.4
vmacro19282 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 5.8e-15 85.5 71 57.7
HanXRQChr16g0505821 Helianthus annuus HOM05D004419 ORTHO05D005480 3.7e-14 82.8 45 73.3
MCO12G327 Micromonas commoda HOM05D004419 ORTHO05D005480 7.8e-12 75.1 156 30.8
MCO01G088 Micromonas commoda HOM05D004419 ORTHO05D005480 6.6e-11 72.0 201 30.8
ECA233G1363 Erigeron canadensis HOM05D002457 ORTHO05D008732 1.6e-09 67.4 153 29.4
Solyc10g081630.2 Solanum lycopersicum HOM05D002457 ORTHO05D008732 2.1e-09 67.0 148 29.7
Os11g0572800 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D008732 2.8e-09 66.6 146 28.1
Sopen10g032140 Solanum pennellii HOM05D002457 ORTHO05D008732 3.6e-09 66.2 148 29.7
unitig_8.g4735 Utricularia gibba HOM05D002457 ORTHO05D008732 3.6e-09 66.2 148 29.1
HanXRQChr13g0398791 Helianthus annuus HOM05D002457 ORTHO05D008732 4.7e-09 65.9 148 28.4
Peaxi162Scf00203g00029 Petunia axillaris HOM05D002457 ORTHO05D008732 4.7e-09 65.9 148 29.7
PGSC0003DMG400028132 Solanum tuberosum HOM05D002457 ORTHO05D008732 4.7e-09 65.9 148 29.7
DCAR_010505 Daucus carota HOM05D004419 ORTHO05D013449 6.2e-09 65.5 58 50.0
SGA_v2.0_scaffold184G40036 Striga asiatica HOM05D002457 ORTHO05D008732 6.2e-09 65.5 148 26.4
AagrBONN_evm.TU.Sc2ySwM_368.1680 Anthoceros agrestis HOM05D002457 ORTHO05D008732 8.1e-09 65.1 166 30.7
DCAR_007794 Daucus carota HOM05D004419 ORTHO05D013449 1.1e-08 64.7 55 50.9
Actinidia06326 Actinidia chinensis HOM05D004419 ORTHO05D005480 1.4e-08 64.3 44 65.9
Zm00001eb200180 Zea mays HOM05D002457 ORTHO05D008732 1.4e-08 64.3 148 27.7
CAN.G128.166 Capsicum annuum HOM05D002457 ORTHO05D008732 1.8e-08 63.9 148 29.1
Lsat_1_v5_gn_2_121640 Lactuca sativa HOM05D002457 ORTHO05D008732 1.8e-08 63.9 148 27.7
Nitab4.5_0000721g0010 Nicotiana tabacum HOM05D002457 ORTHO05D008732 2.3e-08 63.5 148 30.4
Nitab4.5_0012842g0010 Nicotiana tabacum HOM05D002457 ORTHO05D008732 2.3e-08 63.5 148 30.4
Migut.L01840 Erythranthe guttata HOM05D002457 ORTHO05D008732 4.0e-08 62.8 148 25.7
MSTRG.26594 Avicennia marina HOM05D002457 ORTHO05D008732 5.2e-08 62.4 146 27.4
Cre12.g485950 Chlamydomonas reinhardtii HOM05D002457 ORTHO05D008732 2.6e-07 60.1 147 32.7
CARHR206650 Cardamine hirsuta HOM05D002457 ORTHO05D008732 3.4e-07 59.7 148 27.7
PSO339G5312 Papaver somniferum HOM05D002457 ORTHO05D008732 3.4e-07 59.7 146 28.1
DCAR_013044 Daucus carota HOM05D004419 ORTHO05D005480 4.4e-07 59.3 31 77.4
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 9.9e-07 58.2 63 49.2
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.7e-06 57.4 59 47.5


User provided reference genes

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