Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 0.0e+00 1875.1 989 100.0
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 0.0e+00 1570.1 985 81.3
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 0.0e+00 1567.0 990 81.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 0.0e+00 1552.0 1006 79.2
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 0.0e+00 1379.8 990 71.2
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 0.0e+00 1378.6 989 71.5
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 0.0e+00 1364.4 989 70.8
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 0.0e+00 1352.8 989 70.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 0.0e+00 1262.7 984 67.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 0.0e+00 1261.9 984 66.8
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 0.0e+00 1245.7 988 67.1
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 0.0e+00 1236.9 989 66.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 0.0e+00 1167.9 913 66.7
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.3e-297 1026.5 986 56.1
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 7.2e-296 1020.8 990 55.1
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 9.1e-291 1003.8 981 55.0
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 6.5e-289 997.7 1003 53.9
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.1e-288 996.9 997 53.8
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 9.4e-288 993.8 1011 53.3
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.4e-283 979.9 997 53.1
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.4e-283 979.2 991 53.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 4.5e-282 974.9 976 54.0
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.7e-281 973.0 979 54.1
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 7.2e-280 967.6 990 52.4
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 8.0e-279 964.1 985 52.6
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.4e-278 963.4 985 53.0
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 8.8e-278 960.7 983 54.7
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-277 959.9 1011 51.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 3.3e-277 958.7 1012 51.7
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 7.5e-277 957.6 985 52.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.1e-275 952.2 986 53.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 2.0e-274 949.5 995 52.6
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.7e-273 946.4 1029 50.5
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 9.4e-272 940.6 1004 52.2
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.8e-268 928.3 987 51.0
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 8.3e-268 927.5 979 51.4
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 3.1e-267 925.6 981 53.3
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.1e-264 917.1 962 53.7
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 2.6e-261 906.0 997 50.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.4e-261 905.2 994 50.4
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.5e-261 904.4 1075 48.3
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 4.9e-260 901.7 998 50.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.4e-259 900.2 992 49.2
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 7.0e-259 897.9 990 50.8
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 9.2e-259 897.5 996 50.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.6e-258 896.7 983 50.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 5.9e-258 894.8 998 50.1
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.0e-257 894.0 992 51.0
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 1.9e-256 889.8 992 49.7
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 2.8e-255 885.9 995 49.1
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 3.6e-255 885.6 1002 49.3
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 5.2e-254 881.7 979 49.7
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 8.3e-252 874.4 980 49.1
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.4e-251 873.6 993 50.1
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.3e-246 856.3 979 49.3
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.5e-245 853.6 977 47.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 6.4e-244 848.2 1022 47.5
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 6.0e-242 841.6 988 48.0
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.8e-239 832.8 996 47.6
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 2.3e-238 829.7 996 47.0
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.4e-235 819.7 983 47.6
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 5.4e-235 818.5 982 48.3
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.7e-233 813.5 993 47.4
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.2e-231 807.4 974 45.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 2.1e-231 806.6 982 46.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.1e-230 802.7 998 46.6
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 8.9e-230 801.2 991 46.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.2e-226 790.8 974 45.8
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.7e-225 786.9 994 45.3
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.6e-223 780.4 972 46.6
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.4e-222 777.3 995 46.4
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-222 776.9 1039 45.1
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.9e-222 775.0 1007 45.6
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 4.2e-219 765.8 1015 45.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.1e-218 763.5 1009 45.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.7e-218 763.1 869 48.8
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 3.1e-214 749.6 917 47.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.0e-213 746.9 842 51.3
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.7e-212 743.8 1009 44.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.2e-212 743.4 984 43.7
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.1e-211 741.1 992 45.7
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 6.2e-207 725.3 1012 44.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 9.0e-206 721.5 977 43.8
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.9e-204 716.5 840 48.9
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.1e-198 698.0 989 43.5
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.8e-196 689.5 845 47.7
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.9e-195 687.2 1000 42.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 4.6e-194 682.6 1015 41.7
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.0e-193 681.4 986 42.5
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-187 660.2 1007 41.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 7.2e-187 658.7 1012 41.7
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 6.1e-186 655.6 1008 41.5
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 9.7e-184 648.3 933 42.9
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-182 644.4 888 44.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-182 644.0 928 43.4
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 7.2e-179 632.1 1044 39.7
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 4.7e-178 629.4 763 46.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 9.1e-174 615.1 753 46.1
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.2e-173 614.8 902 42.0
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-166 590.5 608 53.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-165 588.2 608 53.0
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.0e-160 570.9 679 47.9
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 2.0e-160 570.9 904 39.6
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-157 560.8 953 39.6
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.0e-153 546.6 702 43.6
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-148 531.6 835 40.8
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.9e-143 513.1 856 39.0
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.2e-135 487.6 811 40.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 7.0e-134 482.6 703 41.3
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 9.2e-134 482.3 703 41.3
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 5.2e-129 466.5 701 38.7
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.4e-128 463.4 704 38.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 5.4e-126 456.4 1056 33.0
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.2e-121 439.9 632 41.8
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.1e-118 432.2 896 33.7
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.2e-118 430.6 908 33.5
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.6e-117 428.3 991 32.3
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-115 421.0 748 37.4
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.4e-113 415.2 983 32.0
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-113 414.8 743 37.3
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.6e-106 391.7 564 41.8
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 3.8e-103 380.6 516 45.0
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 2.8e-98 364.4 358 54.5
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.1e-94 352.4 259 69.1
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.8e-92 345.1 261 67.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.5e-88 330.5 634 35.2
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 6.4e-87 326.6 631 35.0
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.7e-77 294.7 596 34.6
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-74 285.0 416 41.6
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.2e-71 275.0 592 33.6
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-65 256.1 1190 24.3
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-65 255.4 353 44.2
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-61 242.7 343 41.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.7e-58 231.1 213 52.6
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.7e-53 214.2 263 44.1
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 3.7e-50 204.5 142 69.0
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-49 203.0 199 52.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-48 199.5 263 44.5
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 5.9e-48 197.2 230 47.4
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 3.7e-42 177.9 185 49.7
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 7.0e-41 173.7 143 62.2
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.6e-37 161.4 97 83.5
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.8e-33 149.1 342 31.6
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 3.8e-31 141.4 217 37.8
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 4.2e-30 137.9 142 53.5
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.1e-29 134.0 95 71.6
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 4.4e-27 127.9 119 51.3
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 4.6e-24 117.9 149 45.6
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.5e-22 112.1 95 58.9
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.4e-20 106.3 286 28.7
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-19 102.8 462 25.3
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-19 102.4 141 42.6
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.4e-17 95.5 105 49.5
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-17 94.4 155 39.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.6e-16 92.8 149 40.3
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 3.5e-16 91.7 257 28.4
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-16 90.9 155 38.1
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.3e-15 89.7 228 30.3
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.9e-14 85.9 70 58.6
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 3.3e-14 85.1 128 39.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 8.1e-13 80.5 115 40.9
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-12 79.3 115 40.0
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 6.8e-12 77.4 87 48.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 8.9e-12 77.0 86 48.8
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 2.0e-11 75.9 87 47.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 2.0e-11 75.9 87 47.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 4.9e-10 71.2 97 43.3
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 6.4e-10 70.9 102 41.2
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 6.4e-10 70.9 83 45.8
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 1.7e-07 62.8 103 36.9
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 1.7e-07 62.8 88 43.2
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 1.7e-07 62.8 88 43.2
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 4.3e-06 58.2 97 38.1


User provided reference genes

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