Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g034480 Pisum sativum HOM05D001410 ORTHO05D015240 3.6e-28 127.9 81 100.0
CSS0049825 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D003969 6.8e-11 70.5 46 69.6
Potri.014G112400 Populus trichocarpa HOM05D001410 ORTHO05D003969 1.5e-10 69.3 47 74.5
Sabra14G0082700 Salix brachista HOM05D001410 ORTHO05D003969 1.5e-10 69.3 47 74.5
Ca_09246_v3 Cicer arietinum L. HOM05D001410 ORTHO05D003969 3.4e-10 68.2 46 69.6
Lj6A703T91 Lonicera japonica HOM05D001410 ORTHO05D003969 3.4e-10 68.2 46 69.6
Medtr7g110660 Medicago truncatula HOM05D001410 ORTHO05D003969 4.4e-10 67.8 45 71.1
Ciclev10031253m.g Citrus clementina HOM05D001410 ORTHO05D003969 5.8e-10 67.4 46 71.7
MELO3C017711.2 Cucumis melo HOM05D001410 ORTHO05D003969 5.8e-10 67.4 46 69.6
Eucgr.K00563 Eucalyptus grandis HOM05D001410 ORTHO05D003969 5.8e-10 67.4 46 69.6
GSVIVG01028250001 Vitis vinifera HOM05D001410 ORTHO05D003969 5.8e-10 67.4 46 73.9
ClCG01G007170 Citrullus lanatus HOM05D001410 ORTHO05D003969 7.5e-10 67.0 46 69.6
MELO3C005193.2 Cucumis melo HOM05D001410 ORTHO05D003969 7.5e-10 67.0 46 69.6
CsaV3_4G003400 Cucumis sativus L. HOM05D001410 ORTHO05D003969 7.5e-10 67.0 46 69.6
QL11p011484 Quercus lobata HOM05D001410 ORTHO05D003969 7.5e-10 67.0 45 71.1
Sed0023675 Sechium edule HOM05D001410 ORTHO05D003969 7.5e-10 67.0 46 69.6
TWI14G1260 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 7.5e-10 67.0 46 73.9
CiPaw.08G082700 Carya illinoinensis HOM05D001410 ORTHO05D015240 9.9e-10 66.6 47 70.2
Migut.N02489 Erythranthe guttata HOM05D001410 ORTHO05D003969 9.9e-10 66.6 47 72.3
Manes.01G235100 Manihot esculenta HOM05D001410 ORTHO05D003969 9.9e-10 66.6 46 71.7
Sc18g0006170 Simmondsia chinensis HOM05D001410 ORTHO05D003969 9.9e-10 66.6 47 70.2
Dinv29495 Davidia involucrata HOM05D001410 ORTHO05D003969 1.3e-09 66.2 46 71.7
Hund19272 Selenicereus undatus HOM05D001410 ORTHO05D003969 1.3e-09 66.2 46 69.6
SGA_v2.0_scaffold147G36388 Striga asiatica HOM05D001410 ORTHO05D003969 1.3e-09 66.2 46 69.6
SGA_v2.0_scaffold22G09857 Striga asiatica HOM05D001410 ORTHO05D003969 1.3e-09 66.2 46 69.6
SGA_v2.0_scaffold262G45927 Striga asiatica HOM05D001410 ORTHO05D003969 1.3e-09 66.2 45 73.3
Glyma.03G224500 Glycine max HOM05D001410 ORTHO05D003969 1.7e-09 65.9 46 67.4
Lj3C841G7 Lonicera japonica HOM05D001410 ORTHO05D003969 1.7e-09 65.9 47 68.1
SalBow3G3029 Salvia bowleyana HOM05D001410 ORTHO05D003969 1.7e-09 65.9 45 73.3
TWI59G1486 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 1.7e-09 65.9 46 71.7
unitig_27.g25116 Utricularia gibba HOM05D001410 ORTHO05D003969 1.7e-09 65.9 45 73.3
VMungo1383G1850 Vigna mungo HOM05D001410 ORTHO05D003969 1.7e-09 65.9 46 67.4
Ah.04g153520 Amaranthus hybridus HOM05D001410 ORTHO05D003969 2.2e-09 65.5 46 67.4
Nn7g37405 Nelumbo nucifera HOM05D001410 ORTHO05D003969 2.2e-09 65.5 46 67.4
Potri.002G187000 Populus trichocarpa HOM05D001410 ORTHO05D003969 2.2e-09 65.5 47 70.2
Prupe.1G103500 Prunus persica HOM05D001410 ORTHO05D003969 2.2e-09 65.5 46 67.4
TWI32G0004 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 2.2e-09 65.5 46 71.7
EL10Ac3g06719 Beta vulgaris HOM05D001410 ORTHO05D003969 2.9e-09 65.1 45 68.9
ClCG07G015700 Citrullus lanatus HOM05D001410 ORTHO05D003969 2.9e-09 65.1 45 68.9
Migut.D02441 Erythranthe guttata HOM05D001410 ORTHO05D003969 2.9e-09 65.1 46 71.7
PGR142G3315 Punica granatum HOM05D001410 ORTHO05D003969 2.9e-09 65.1 45 66.7
TAR365G0316 Trochodendron aralioides HOM05D001410 ORTHO05D003969 2.9e-09 65.1 45 68.9
MSTRG.18762 Avicennia marina HOM05D001410 ORTHO05D003969 4.9e-09 64.3 45 71.1
Cpa.g.sc285.2 Carica papaya HOM05D001410 ORTHO05D003969 4.9e-09 64.3 45 66.7
Oeu007521.3 Olea europaea HOM05D001410 ORTHO05D003969 4.9e-09 64.3 44 70.5
Oeu038081.1 Olea europaea HOM05D001410 ORTHO05D003969 4.9e-09 64.3 44 70.5
CAN.G407.29 Capsicum annuum HOM05D001410 ORTHO05D015240 6.4e-09 63.9 45 71.1
Nitab4.5_0000373g0210 Nicotiana tabacum HOM05D001410 ORTHO05D003969 6.4e-09 63.9 44 70.5
Nitab4.5_0006185g0010 Nicotiana tabacum HOM05D001410 ORTHO05D003969 6.4e-09 63.9 44 70.5
MSTRG.21039 Avicennia marina HOM05D001410 ORTHO05D003969 8.3e-09 63.5 45 71.1
Eucgr.J00690 Eucalyptus grandis HOM05D001410 ORTHO05D003969 8.3e-09 63.5 44 68.2
Atru.chr5.3423 Acer truncatum HOM05D001410 ORTHO05D003969 1.1e-08 63.2 45 68.9
arahy.Tifrunner.gnm1.ann1.QYSL7K Arachis hypogaea HOM05D001410 ORTHO05D003969 1.1e-08 63.2 46 65.2
CiPaw.07G125500 Carya illinoinensis HOM05D001410 ORTHO05D003969 1.1e-08 63.2 45 66.7
COL.COLO4_23130 Corchorus olitorius HOM05D001410 ORTHO05D003969 1.1e-08 63.2 43 74.4
Phvul.001G218300 Phaseolus vulgaris HOM05D001410 ORTHO05D003969 1.1e-08 63.2 46 65.2
Sc25g0004870 Simmondsia chinensis HOM05D001410 ORTHO05D003969 1.1e-08 63.2 47 66.0
Nn1g09397 Nelumbo nucifera HOM05D001410 ORTHO05D003969 1.4e-08 62.8 45 66.7
Hma1.2p1_0484F.1_g162960 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 2.4e-08 62.0 44 65.9
Hma1.2p1_0484F.1_g162965 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 2.4e-08 62.0 44 65.9
Sed0015133 Sechium edule HOM05D001410 ORTHO05D003969 2.4e-08 62.0 45 64.4
Atru.chr4.407 Acer truncatum HOM05D001410 ORTHO05D003969 3.2e-08 61.6 45 66.7
CSS0006615 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D015240 3.2e-08 61.6 44 65.9
PGSC0003DMG400014136 Solanum tuberosum HOM05D001410 ORTHO05D003969 3.2e-08 61.6 45 68.9
CAN.G1490.15 Capsicum annuum HOM05D001410 ORTHO05D003969 4.1e-08 61.2 57 56.1
Dinv12081 Davidia involucrata HOM05D001410 ORTHO05D003969 4.1e-08 61.2 44 63.6
Solyc06g068320.3 Solanum lycopersicum HOM05D001410 ORTHO05D003969 4.1e-08 61.2 57 56.1
Sopen06g025590 Solanum pennellii HOM05D001410 ORTHO05D003969 4.1e-08 61.2 57 56.1
PGSC0003DMG400028502 Solanum tuberosum HOM05D001410 ORTHO05D003969 4.1e-08 61.2 57 56.1
Zm00001eb073240 Zea mays HOM05D001410 ORTHO05D003969 4.1e-08 61.2 44 68.2
Zm00001eb202580 Zea mays HOM05D001410 ORTHO05D003969 4.1e-08 61.2 44 68.2
CDE06G1090 Ceratophyllum demersum HOM05D001410 ORTHO05D003969 5.4e-08 60.8 43 67.4
CDE08G1059 Ceratophyllum demersum HOM05D001410 ORTHO05D003969 5.4e-08 60.8 43 67.4
Peaxi162Scf00207g00533 Petunia axillaris HOM05D001410 ORTHO05D003969 5.4e-08 60.8 44 68.2
HPP92_001947 Vanilla planifolia HOM05D001410 ORTHO05D003969 7.1e-08 60.5 43 65.1
Actinidia06405 Actinidia chinensis HOM05D001410 ORTHO05D003969 9.2e-08 60.1 43 65.1
Actinidia21341 Actinidia chinensis HOM05D001410 ORTHO05D015240 9.2e-08 60.1 43 67.4
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 9.2e-08 60.1 43 65.1
Peaxi162Scf00045g00024 Petunia axillaris HOM05D001410 ORTHO05D003969 9.2e-08 60.1 43 67.4
SEGI_11320 Sequoiadendron giganteum HOM05D001410 ORTHO05D003969 9.2e-08 60.1 43 65.1
Actinidia20965 Actinidia chinensis HOM05D001410 ORTHO05D003969 1.2e-07 59.7 46 60.9
Solyc03g117330.4 Solanum lycopersicum HOM05D001410 ORTHO05D003969 1.2e-07 59.7 44 68.2
Pp3c2_3850 Physcomitrium patens HOM05D001410 ORTHO05D003969 1.6e-07 59.3 45 62.2
Rhsim01G0000400 Rhododendron simsii HOM05D001410 ORTHO05D003969 1.6e-07 59.3 43 65.1
Rhsim02G0055200 Rhododendron simsii HOM05D001410 ORTHO05D003969 1.6e-07 59.3 43 65.1
Duzib268G0962 Durio zibethinus HOM05D001410 ORTHO05D003969 2.1e-07 58.9 41 68.3
Duzib268G1140 Durio zibethinus HOM05D001410 ORTHO05D003969 2.1e-07 58.9 41 68.3
PSO384G2916 Papaver somniferum HOM05D001410 ORTHO05D003969 2.1e-07 58.9 46 60.9
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 2.7e-07 58.5 42 66.7
RcHm_v2.0_Chr2g0137801 Rosa chinensis HOM05D001410 ORTHO05D003969 3.5e-07 58.2 47 61.7
Sopen03g036220 Solanum pennellii HOM05D001410 ORTHO05D003969 3.5e-07 58.2 42 69.0
CANSAT54G2973 Cannabis sativa HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Ciclev10019765m.g Citrus clementina HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Duzib133G0171 Durio zibethinus HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gohir.A06G209000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gohir.A12G120000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gohir.D06G212000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gohir.D12G123600 Gossypium hirsutum HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gorai.008G134700 Gossypium raimondii HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Gorai.010G254000 Gossypium raimondii HOM05D001410 ORTHO05D015240 4.6e-07 57.8 24 100.0
MD13G1156800 Malus domestica HOM05D001410 ORTHO05D003969 4.6e-07 57.8 41 65.9
MD16G1134100 Malus domestica HOM05D001410 ORTHO05D003969 4.6e-07 57.8 41 65.9
Psat3g016680 Pisum sativum HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Thecc.01G325200 Theobroma cacao HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
TPR.G2469 Trifolium pratense HOM05D001410 ORTHO05D003969 4.6e-07 57.8 24 100.0
Duzib268G1550 Durio zibethinus HOM05D001410 ORTHO05D003969 6.0e-07 57.4 41 65.9
Nitab4.5_0002322g0120 Nicotiana tabacum HOM05D001410 ORTHO05D003969 6.0e-07 57.4 58 51.7
Nitab4.5_0011429g0010 Nicotiana tabacum HOM05D001410 ORTHO05D003969 6.0e-07 57.4 58 51.7
ECA236G4070 Erigeron canadensis HOM05D001410 ORTHO05D003969 7.8e-07 57.0 43 60.5
ATR0730G099 Amborella trichopoda HOM05D001410 ORTHO05D003969 1.0e-06 56.6 45 57.8
FvH4_6g31250 Fragaria vesca HOM05D001410 ORTHO05D003969 1.0e-06 56.6 49 57.1
FAN14G4573 Fragaria x ananassa HOM05D001410 ORTHO05D003969 1.0e-06 56.6 49 57.1
Os12g0443700 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D003969 1.0e-06 56.6 41 68.3
RcHm_v2.0_Chr1g0313171 Rosa chinensis HOM05D001410 ORTHO05D015240 1.0e-06 56.6 41 65.9
Cfa004912 Carpinus fangiana HOM05D001410 ORTHO05D003969 1.3e-06 56.2 40 65.0
SMO367G0299 Selaginella moellendorffii HOM05D001410 ORTHO05D003969 1.3e-06 56.2 42 64.3
Cc05_g00870 Coffea canephora HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
FvH4_4g21680 Fragaria vesca HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
FAN07G2033 Fragaria x ananassa HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
FAN12G1773 Fragaria x ananassa HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
FAN17G1356 Fragaria x ananassa HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
Lsat_1_v5_gn_8_103640 Lactuca sativa HOM05D001410 ORTHO05D003969 1.7e-06 55.8 43 60.5
TAR633G0527 Trochodendron aralioides HOM05D001410 ORTHO05D003969 1.7e-06 55.8 24 95.8
AUR62012943 Chenopodium quinoa HOM05D001410 ORTHO05D003969 2.3e-06 55.5 24 95.8
AUR62035357 Chenopodium quinoa HOM05D001410 ORTHO05D003969 2.3e-06 55.5 24 95.8
AUR62035889 Chenopodium quinoa HOM05D001410 ORTHO05D003969 2.3e-06 55.5 24 95.8
Glyma.19G221400 Glycine max HOM05D001410 ORTHO05D003969 2.3e-06 55.5 24 95.8
Lsat_1_v5_gn_9_93401 Lactuca sativa HOM05D001410 ORTHO05D003969 2.3e-06 55.5 43 60.5
Lj1g0011311 Lotus japonicus HOM05D001410 ORTHO05D003969 2.3e-06 55.5 24 95.8
MBI14_g06389_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D003969 2.3e-06 55.5 43 60.5
HPP92_001179 Vanilla planifolia HOM05D001410 ORTHO05D003969 2.3e-06 55.5 43 60.5
Lalb_Chr15g0077891 Lupinus albus HOM05D001410 ORTHO05D003969 3.0e-06 55.1 78 52.6
PSO357G0154 Papaver somniferum HOM05D001410 ORTHO05D003969 3.9e-06 54.7 24 91.7
SGA_v2.0_scaffold87G27134 Striga asiatica HOM05D001410 ORTHO05D003969 3.9e-06 54.7 47 57.4
Lj2g0010468 Lotus japonicus HOM05D001410 ORTHO05D003969 5.1e-06 54.3 24 91.7
QL10p022575 Quercus lobata HOM05D001410 ORTHO05D003969 5.1e-06 54.3 24 91.7
RcHm_v2.0_Chr6g0261561 Rosa chinensis HOM05D001410 ORTHO05D015240 5.1e-06 54.3 24 95.8
SalBow6G3314 Salvia bowleyana HOM05D001410 ORTHO05D003969 5.1e-06 54.3 64 51.6
RcHm_v2.0_Chr2g0166461 Rosa chinensis HOM05D001410 ORTHO05D003969 6.6e-06 53.9 24 91.7
THA.LOC104817431 Tarenaya hassleriana HOM05D001410 ORTHO05D003969 6.6e-06 53.9 24 91.7
vmacro18594 Vaccinium macrocarpon HOM05D001410 ORTHO05D003969 8.6e-06 53.5 24 87.5


User provided reference genes

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