Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g241000 Pisum sativum HOM05D000104 ORTHO05D026582 2.0e-101 372.5 189 100.0
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 9.8e-77 290.4 177 87.0
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 1.6e-71 273.1 177 82.5
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 1.4e-70 270.0 171 83.0
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 3.2e-67 258.8 171 81.3
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 9.2e-67 257.3 176 76.7
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 1.7e-65 253.1 173 76.3
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 8.6e-65 250.8 171 77.2
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 8.6e-65 250.8 171 77.2
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 8.6e-65 250.8 176 74.4
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 8.6e-65 250.8 173 76.3
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 2.1e-63 246.1 173 75.7
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 5.8e-61 238.0 172 73.3
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 2.4e-59 232.6 172 74.4
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.6e-58 229.9 179 67.0
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 6.0e-58 228.0 175 67.4
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 2.3e-57 226.1 172 67.4
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 5.1e-57 224.9 174 67.2
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 1.5e-56 223.4 176 68.2
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 1.9e-56 223.0 179 63.7
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 2.5e-56 222.6 178 67.4
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 3.3e-56 222.2 174 65.5
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 3.3e-56 222.2 172 67.4
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 3.1e-54 215.7 178 65.7
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 5.2e-54 214.9 172 66.3
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 2.2e-52 209.5 176 61.9
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 7.1e-51 204.5 172 63.4
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 9.2e-51 204.1 171 62.6
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 3.5e-50 202.2 174 61.5
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 4.6e-50 201.8 177 63.3
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 6.0e-50 201.4 169 63.3
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 7.8e-50 201.1 177 61.0
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 7.8e-50 201.1 171 64.3
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 7.8e-50 201.1 171 62.6
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 3.0e-49 199.1 172 62.2
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.0e-49 199.1 178 61.2
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 3.9e-49 198.7 172 62.2
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 5.1e-49 198.4 174 61.5
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 8.6e-49 197.6 174 63.8
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 1.9e-48 196.4 172 59.9
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 1.9e-48 196.4 165 62.4
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.5e-48 196.1 174 59.8
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 2.5e-48 196.1 174 59.2
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.6e-48 194.9 172 61.0
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 5.6e-48 194.9 174 62.1
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 7.3e-48 194.5 178 57.9
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 1.2e-47 193.7 172 59.3
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 2.8e-47 192.6 165 61.2
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 4.7e-47 191.8 171 60.8
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 6.2e-47 191.4 181 57.5
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 6.2e-47 191.4 175 60.0
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.1e-47 191.0 174 58.6
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.1e-47 191.0 171 60.2
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 8.1e-47 191.0 174 60.9
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-46 190.3 171 60.2
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-46 190.3 171 60.2
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-46 190.3 171 60.2
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.4e-46 190.3 165 61.2
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.8e-46 189.9 171 60.2
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.8e-46 189.9 171 60.2
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.4e-46 189.5 173 59.0
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 4.0e-46 188.7 172 59.9
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 5.2e-46 188.3 171 59.6
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 5.2e-46 188.3 165 58.8
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.6e-45 186.0 171 58.5
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 4.4e-45 185.3 172 58.7
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.3e-44 183.7 175 54.9
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 1.7e-44 183.3 174 58.6
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 2.2e-44 183.0 178 56.2
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.9e-44 182.6 178 55.1
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.9e-44 181.8 165 59.4
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.9e-44 181.8 165 59.4
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 4.9e-44 181.8 165 58.8
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 4.9e-44 181.8 172 55.8
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.4e-43 180.3 174 57.5
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 3.2e-43 179.1 178 54.5
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 7.1e-43 177.9 176 56.8
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 7.1e-43 177.9 165 58.2
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 1.2e-42 177.2 174 55.2
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.5e-40 169.5 175 53.1
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 4.3e-40 168.7 181 52.5
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 5.6e-40 168.3 174 50.6
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 5.6e-40 168.3 165 57.6
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 7.3e-40 167.9 174 56.3
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 9.6e-40 167.5 172 55.2
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.2e-39 167.2 171 55.0
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 1.6e-39 166.8 171 54.4
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 2.8e-39 166.0 172 54.7
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 3.6e-39 165.6 184 48.9
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 4.7e-39 165.2 172 54.7
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 4.7e-39 165.2 172 55.2
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 4.7e-39 165.2 179 48.6
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 8.1e-39 164.5 171 53.8
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 8.1e-39 164.5 179 48.6
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 8.1e-39 164.5 172 55.2
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 1.4e-38 163.7 172 55.2
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.2e-37 160.6 172 54.1
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 1.5e-37 160.2 172 53.5
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 1.5e-37 160.2 172 53.5
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 1.5e-37 160.2 172 53.5
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.5e-37 160.2 172 53.5
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 2.0e-37 159.8 172 54.1
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 4.4e-37 158.7 174 52.3
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 2.9e-36 156.0 165 52.1
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 3.8e-36 155.6 169 47.9
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 4.9e-36 155.2 163 51.5
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 4.9e-36 155.2 170 55.9
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 6.4e-36 154.8 172 51.7
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.4e-36 154.8 131 61.8
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 8.4e-36 154.5 169 50.3
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 1.9e-35 153.3 172 51.7
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 7.1e-35 151.4 180 47.8
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 9.3e-35 151.0 173 52.0
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 2.1e-34 149.8 169 53.8
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 2.7e-34 149.4 163 54.0
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 4.6e-34 148.7 171 51.5
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.0e-33 147.5 161 51.6
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.3e-33 147.1 165 52.7
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.3e-33 147.1 168 45.2
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 1.7e-33 146.7 166 50.6
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 1.5e-32 143.7 159 50.3
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 1.5e-32 143.7 175 50.3
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 3.3e-32 142.5 162 50.0
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 5.6e-32 141.7 158 51.9
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.6e-31 140.2 166 45.8
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 2.1e-31 139.8 136 56.6
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 2.1e-31 139.8 178 43.8
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 2.8e-31 139.4 178 43.3
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 3.6e-31 139.0 166 48.8
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 6.2e-31 138.3 165 46.1
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 1.8e-30 136.7 173 43.4
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.4e-30 136.3 165 47.3
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 1.2e-29 134.0 176 41.5
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 4.5e-29 132.1 167 44.9
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 5.8e-29 131.7 162 43.8
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 9.9e-29 131.0 163 51.5
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 3.8e-28 129.0 165 44.2
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 6.4e-28 128.3 140 48.6
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 8.4e-28 127.9 129 53.5
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 3.2e-27 125.9 175 46.3
THA.LOC104827600 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 3.5e-26 122.5 103 61.2
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 4.6e-26 122.1 173 38.2
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 5.6e-24 115.2 73 74.0
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 9.6e-24 114.4 173 37.6
BcaC06g34217 Brassica carinata HOM05D000104 ORTHO05D004024 1.1e-22 110.9 194 41.2
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 2.9e-20 102.8 112 51.8
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.8e-17 93.6 168 38.1
C07p31570 Brassica napus HOM05D000104 ORTHO05D004024 8.7e-17 91.3 88 52.3
HPP92_025787 Vanilla planifolia HOM05D000104 ORTHO05D026582 1.8e-14 83.6 108 41.7
HPP92_025795 Vanilla planifolia HOM05D000104 ORTHO05D026582 1.8e-14 83.6 108 41.7
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 1.0e-12 77.8 87 46.0
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 8.4e-12 74.7 79 53.2
SEGI_34234 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 3.2e-11 72.8 155 34.2
MD01G1206100 Malus domestica HOM05D000104 ORTHO05D004024 5.7e-08 62.0 145 29.7
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 1.8e-06 57.0 87 35.6
SMO351G0468 Selaginella moellendorffii HOM05D000104 ORTHO05D004024 1.8e-06 57.0 105 31.4
ATR1149G139 Amborella trichopoda HOM05D000104 ORTHO05D026582 3.1e-06 56.2 65 47.7


User provided reference genes

Program Settings