Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.0e-282 976.1 498 100.0
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 8.7e-266 919.8 500 94.6
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 3.2e-260 901.4 503 91.8
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 3.8e-253 877.9 502 90.6
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 1.7e-245 852.4 505 87.9
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 1.8e-242 842.4 502 88.8
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.4e-239 832.8 510 85.9
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 8.2e-224 780.4 515 80.4
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 7.4e-217 757.3 499 80.4
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 9.1e-215 750.4 505 79.2
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.0e-213 746.9 509 80.2
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 1.7e-213 746.1 492 80.3
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 5.5e-212 741.1 492 78.7
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.9e-205 718.8 492 76.0
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.2e-201 706.8 478 76.4
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.4e-199 699.9 501 73.7
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 2.4e-199 699.1 501 73.5
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.4e-199 699.1 515 73.0
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 5.4e-199 698.0 493 74.2
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 4.5e-198 694.9 500 73.4
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 5.9e-198 694.5 511 71.6
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 2.3e-197 692.6 493 73.8
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 2.9e-197 692.2 488 75.0
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.9e-196 689.5 439 79.5
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 3.3e-196 688.7 496 72.8
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 4.2e-196 688.3 448 79.2
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 1.6e-195 686.4 454 77.3
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.4e-194 683.3 496 73.6
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.8e-194 682.9 486 73.3
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 5.2e-194 681.4 495 72.7
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 6.8e-194 681.0 511 68.9
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 8.9e-194 680.6 495 72.1
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 2.6e-193 679.1 512 68.4
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 2.2e-192 676.0 493 71.0
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 4.1e-191 671.8 454 75.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 7.0e-191 671.0 508 69.3
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.2e-190 670.2 497 71.4
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.6e-190 669.8 439 77.7
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.6e-190 669.8 483 71.8
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 1.6e-190 669.8 498 70.5
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 3.5e-190 668.7 495 71.5
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 7.8e-190 667.5 493 70.8
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.9e-189 665.6 496 68.8
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 3.9e-189 665.2 499 70.3
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 5.0e-189 664.8 518 69.5
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 5.0e-189 664.8 507 68.8
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.2e-187 660.2 499 70.1
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 4.7e-187 658.3 491 69.0
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 6.2e-187 657.9 438 75.8
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.0e-186 657.1 476 70.6
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 5.2e-186 654.8 465 71.8
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 8.9e-186 654.1 501 69.3
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 1.2e-185 653.7 565 62.8
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 2.0e-185 652.9 452 72.3
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.4e-185 652.1 501 69.3
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 4.4e-185 651.7 447 72.7
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 9.8e-185 650.6 463 71.3
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.7e-184 649.8 439 74.5
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 2.2e-184 649.4 491 68.4
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.2e-184 649.4 444 73.9
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.1e-183 647.1 439 73.3
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-183 646.7 439 72.9
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.4e-183 646.7 481 70.3
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 1.4e-183 646.7 504 66.7
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.9e-183 646.4 514 66.7
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 5.4e-183 644.8 439 72.9
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 5.4e-183 644.8 447 71.8
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 9.2e-183 644.0 507 66.9
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 9.2e-183 644.0 471 70.9
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 9.2e-183 644.0 463 70.6
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-182 643.7 439 72.7
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.2e-182 643.7 506 67.6
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 2.0e-182 642.9 439 72.7
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-182 642.9 496 68.8
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.7e-182 642.5 440 74.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.0e-181 640.6 442 73.8
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.0e-181 640.6 440 72.5
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 2.3e-181 639.4 439 73.1
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 2.3e-181 639.4 439 73.1
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 5.0e-181 638.3 501 66.5
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 6.6e-181 637.9 463 69.3
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.5e-180 636.0 439 72.7
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.5e-180 636.0 439 72.7
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 3.3e-180 635.6 516 64.7
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 5.6e-180 634.8 502 67.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 9.5e-180 634.0 439 71.8
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.6e-179 633.3 480 67.9
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.1e-179 632.9 441 71.7
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 4.7e-179 631.7 488 68.0
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 4.7e-179 631.7 442 72.9
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.4e-178 630.2 440 71.6
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.4e-178 630.2 455 70.3
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 2.3e-178 629.4 491 66.2
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 2.3e-178 629.4 492 66.5
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 6.8e-178 627.9 493 66.3
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 2.0e-177 626.3 487 67.1
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 9.8e-177 624.0 487 66.9
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 8.3e-176 620.9 493 66.7
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 4.1e-175 618.6 489 65.8
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 3.5e-174 615.5 479 66.0
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.2e-171 607.1 514 65.0
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 2.1e-171 606.3 440 71.4
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 2.4e-167 592.8 449 69.7
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 1.1e-164 583.9 457 64.6
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 3.6e-163 578.9 455 66.8
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 4.7e-163 578.6 441 66.0
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.4e-162 576.2 441 66.9
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.3e-155 553.9 459 63.2
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 4.8e-155 552.0 440 62.3
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 6.6e-149 531.6 513 62.2
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 6.6e-149 531.6 379 71.5
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.0e-146 522.3 339 78.2
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 8.4e-144 514.6 454 63.2
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 4.2e-143 512.3 478 55.0
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 1.0e-141 507.7 439 65.6
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-139 500.7 495 57.0
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 5.3e-138 495.4 442 58.1
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 4.1e-130 469.2 505 49.9
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.2e-129 467.6 480 51.0
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 5.5e-111 405.6 462 53.5
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.0e-101 374.8 235 78.3
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 5.4e-82 309.3 406 46.3
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 8.6e-80 302.0 441 38.5
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 4.7e-78 296.2 249 59.8
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 4.3e-71 273.1 365 45.5
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 4.7e-70 269.6 197 69.0
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.4e-66 258.1 173 74.6
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 1.9e-66 257.7 289 54.3
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 2.1e-62 244.2 345 46.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.2e-60 238.4 462 31.6
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.7e-56 224.6 311 38.3
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.8e-49 199.1 164 64.6
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.3e-48 198.4 399 36.1
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.6e-38 164.9 134 65.7
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.6e-38 163.7 112 71.4
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.4e-34 151.0 96 76.0
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.5e-23 115.2 66 81.8
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 3.7e-22 110.5 78 69.2
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 1.8e-21 108.2 56 91.1
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 6.5e-19 99.8 134 47.0
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 8.4e-19 99.4 70 67.1
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.4e-18 98.6 89 59.6
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 8.7e-16 89.4 85 57.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-13 82.0 64 62.5
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 1.0e-11 75.9 49 73.5
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 1.0e-11 75.9 49 73.5
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 3.8e-11 73.9 66 63.6


User provided reference genes

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