Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 4.0e-284 980.7 484 100.0
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 6.1e-248 860.5 485 88.0
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 8.8e-247 856.7 484 87.0
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 7.5e-222 773.9 474 79.1
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.1e-220 770.0 474 78.7
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 3.2e-217 758.4 489 77.5
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 4.7e-216 754.6 479 76.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 3.7e-213 745.0 473 77.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.4e-212 743.0 478 75.3
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.1e-191 673.7 478 69.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.1e-187 659.4 470 68.1
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.0e-186 657.1 475 68.6
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 3.0e-186 655.6 471 68.4
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.9e-185 652.9 472 69.3
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 7.3e-185 651.0 473 68.1
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 3.1e-183 645.6 474 66.9
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 5.8e-182 641.3 473 67.2
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 9.9e-182 640.6 472 66.5
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 2.4e-180 636.0 472 66.7
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 7.8e-179 630.9 476 64.9
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 1.3e-178 630.2 473 65.8
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 8.7e-178 627.5 476 64.5
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.1e-177 627.1 474 64.8
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.5e-177 626.7 482 65.1
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.3e-177 625.5 477 66.0
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 7.3e-177 624.4 471 65.0
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 7.3e-177 624.4 471 65.0
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.6e-176 623.2 471 65.0
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.7e-176 621.7 478 64.9
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 8.1e-176 620.9 477 65.0
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.1e-175 620.5 476 65.3
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.0e-174 616.3 474 63.3
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 5.8e-174 614.8 485 63.7
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 9.9e-174 614.0 471 64.8
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.3e-173 613.6 469 64.8
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 2.2e-173 612.8 490 62.2
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 2.2e-173 612.8 469 63.5
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.9e-173 612.5 470 64.3
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 3.8e-173 612.1 469 64.6
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.9e-172 609.8 470 62.8
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.9e-172 609.8 475 64.0
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 5.4e-172 608.2 475 63.4
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 7.1e-172 607.8 475 63.6
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 7.1e-172 607.8 478 64.0
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 9.3e-172 607.4 477 63.7
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 3.5e-171 605.5 470 63.0
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 7.8e-171 604.4 473 63.0
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.0e-170 604.0 473 63.4
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 5.6e-169 598.2 340 86.8
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 7.3e-169 597.8 475 63.6
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.4e-167 593.6 475 61.3
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.4e-167 593.6 466 61.8
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 1.8e-167 593.2 483 60.5
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 6.9e-167 591.3 453 62.9
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.5e-166 590.1 477 61.4
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 5.8e-166 588.2 482 61.0
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 5.8e-166 588.2 478 59.8
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.3e-165 587.0 486 60.1
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 1.7e-165 586.6 482 60.8
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 8.4e-165 584.3 484 59.3
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.1e-164 583.9 473 60.9
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.4e-164 583.6 486 59.7
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.4e-164 582.8 481 59.5
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 4.2e-164 582.0 487 60.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 7.1e-164 581.3 472 62.1
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 9.3e-164 580.9 484 59.7
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 4.6e-163 578.6 482 60.6
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 5.1e-162 575.1 484 59.3
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.5e-161 572.8 472 59.7
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 5.6e-161 571.6 484 59.1
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.3e-160 570.5 484 59.3
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 8.1e-160 567.8 486 58.4
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.1e-159 567.4 486 58.4
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 4.2e-156 555.4 495 59.0
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 4.2e-156 555.4 472 59.7
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 7.4e-153 544.7 425 60.2
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.1e-151 540.8 472 57.6
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.1e-151 540.8 424 61.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.4e-151 540.4 472 57.4
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 7.1e-148 528.1 451 59.4
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 5.1e-146 521.9 329 76.6
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.9e-145 520.0 476 55.3
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.4e-143 513.8 374 66.0
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 2.0e-142 510.0 492 53.5
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 7.2e-132 474.9 381 61.9
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.2e-131 474.2 393 58.5
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 7.4e-129 464.9 489 48.3
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 9.7e-129 464.5 316 69.9
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 4.5e-126 455.7 448 50.7
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 5.9e-118 428.7 471 46.7
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 5.3e-111 405.6 432 50.2
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.5e-105 387.5 246 76.4
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.8e-95 354.0 252 68.7
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.6e-94 350.9 381 46.7
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 2.5e-92 343.6 436 41.3
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 9.5e-92 341.7 383 43.3
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 8.9e-90 335.1 278 60.4
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 8.3e-88 328.6 273 60.4
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 2.4e-87 327.0 260 60.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 2.0e-86 323.9 362 46.4
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 9.5e-84 315.1 398 41.0
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 8.0e-83 312.0 296 54.4
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 9.8e-81 305.1 444 39.4
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.4e-79 300.4 316 51.9
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 3.3e-68 263.5 251 55.0
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.1e-67 260.8 184 70.7
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 6.2e-67 259.2 204 65.7
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 2.4e-66 257.3 207 59.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 2.0e-57 227.6 236 53.4
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.9e-55 221.1 224 51.3
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 8.1e-51 205.7 125 74.4
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 4.5e-49 199.9 118 77.1
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 8.4e-40 169.1 117 70.9
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 2.5e-28 131.0 108 63.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 9.0e-26 122.5 115 53.0
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 6.1e-22 109.8 98 59.2
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 8.2e-11 72.8 204 30.4
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 1.8e-10 71.6 204 30.4
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 3.5e-09 67.4 44 70.5
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 2.2e-08 64.7 33 84.8


User provided reference genes

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