Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g034120 Pisum sativum HOM05D004266 ORTHO05D005151 1.2e-104 383.3 204 100.0
Psat6g189240 Pisum sativum HOM05D004266 ORTHO05D005151 6.6e-95 350.9 203 93.1
Psat2g126360 Pisum sativum HOM05D004266 ORTHO05D005151 1.5e-86 323.2 185 94.1
Ca_10640_v3 Cicer arietinum L. HOM05D004266 ORTHO05D005151 4.6e-72 275.0 206 73.3
Medtr1g097280 Medicago truncatula HOM05D004266 ORTHO05D005151 3.9e-71 271.9 203 72.9
TPR.G23156 Trifolium pratense HOM05D004266 ORTHO05D005151 4.5e-59 231.9 206 65.5
Glyma.20G172200 Glycine max HOM05D004266 ORTHO05D005151 7.4e-54 214.5 198 61.6
Phvul.007G085700 Phaseolus vulgaris HOM05D004266 ORTHO05D005151 1.2e-51 207.2 203 60.1
VMungo0720G1722 Vigna mungo HOM05D004266 ORTHO05D005151 2.9e-50 202.6 203 59.1
Glyma.10G219500 Glycine max HOM05D004266 ORTHO05D005151 6.3e-45 184.9 197 57.4
arahy.Tifrunner.gnm1.ann1.BJW38K Arachis hypogaea HOM05D004266 ORTHO05D005151 2.2e-42 176.4 203 54.2
arahy.Tifrunner.gnm1.ann1.XP62BS Arachis hypogaea HOM05D004266 ORTHO05D005151 2.2e-42 176.4 203 54.2
Lj5g0009681 Lotus japonicus HOM05D004266 ORTHO05D005151 6.1e-40 168.3 205 53.7
Lalb_Chr02g0141671 Lupinus albus HOM05D004266 ORTHO05D005151 1.6e-32 143.7 206 47.6
Cfa018249 Carpinus fangiana HOM05D004266 ORTHO05D005151 2.0e-30 136.7 223 43.9
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 1.7e-26 123.6 220 40.0
Prupe.8G045900 Prunus persica HOM05D004266 ORTHO05D005151 2.3e-23 113.2 220 38.2
Psat4g084960 Pisum sativum HOM05D002148 ORTHO05D002547 3.0e-23 112.8 62 95.2
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 3.9e-23 112.5 221 36.7
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 3.9e-23 112.5 214 41.6
CiPaw.16G006400 Carya illinoinensis HOM05D004266 ORTHO05D005151 5.2e-23 112.1 219 40.2
Hma1.2p1_0276F.1_g111070 Hydrangea macrophylla HOM05D004266 ORTHO05D005151 8.8e-23 111.3 223 37.2
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 3.3e-22 109.4 214 36.9
Potri.002G061200 Populus trichocarpa HOM05D004266 ORTHO05D005151 1.3e-21 107.5 198 37.9
GSVIVG01013670001 Vitis vinifera HOM05D004266 ORTHO05D005151 3.7e-21 105.9 227 37.4
MD10G1041800 Malus domestica HOM05D004266 ORTHO05D005151 6.3e-21 105.1 217 37.3
Haze_17848 Corylus avellana HOM05D004266 ORTHO05D005151 1.1e-20 104.4 295 33.6
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 1.4e-20 104.0 198 37.9
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 1.8e-20 103.6 174 43.1
TWI34G1000 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 3.5e-19 99.4 207 36.7
Atru.chr13.1954 Acer truncatum HOM05D004266 ORTHO05D005151 5.9e-19 98.6 208 34.1
FAN27G0763 Fragaria x ananassa HOM05D004266 ORTHO05D005151 1.3e-18 97.4 214 34.1
RcHm_v2.0_Chr6g0273401 Rosa chinensis HOM05D004266 ORTHO05D005151 1.3e-18 97.4 220 35.9
TAR381G0928 Trochodendron aralioides HOM05D000446 ORTHO05D005151 1.3e-18 97.4 226 37.6
FvH4_2g12680 Fragaria vesca HOM05D004266 ORTHO05D005151 2.2e-18 96.7 218 34.4
FAN15G1722 Fragaria x ananassa HOM05D004266 ORTHO05D005151 2.2e-18 96.7 218 35.3
TAR625G1274 Trochodendron aralioides HOM05D004266 ORTHO05D005151 1.9e-17 93.6 225 34.7
CSS0023855 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 1.2e-16 90.9 193 36.3
MD05G1038100 Malus domestica HOM05D004266 ORTHO05D005151 2.7e-16 89.7 204 39.2
Psat1g149000 Pisum sativum HOM05D003602 ORTHO05D005151 4.7e-16 89.0 52 88.5
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 6.1e-16 88.6 222 33.8
Nitab4.5_0003229g0020 Nicotiana tabacum HOM05D004266 ORTHO05D005151 8.0e-16 88.2 213 38.0
CANSAT25G1166 Cannabis sativa HOM05D004266 ORTHO05D005151 2.3e-15 86.7 223 35.4
Nitab4.5_0001207g0010 Nicotiana tabacum HOM05D004266 ORTHO05D005151 2.3e-15 86.7 211 36.5
Rhsim11G0089600 Rhododendron simsii HOM05D004266 ORTHO05D005151 3.0e-15 86.3 206 38.8
Actinidia33386 Actinidia chinensis HOM05D004266 ORTHO05D005151 6.7e-15 85.1 197 35.5
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 8.8e-15 84.7 200 36.5
PGSC0003DMG400012892 Solanum tuberosum HOM05D004266 ORTHO05D005151 1.2e-14 84.3 219 35.6
CAN.G1166.27 Capsicum annuum HOM05D004266 ORTHO05D005151 2.0e-14 83.6 211 37.4
Solyc02g069160.3 Solanum lycopersicum HOM05D004266 ORTHO05D005151 4.4e-14 82.4 220 35.0
TWI60G1440 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 5.7e-14 82.0 225 33.8
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 1.3e-13 80.9 200 35.5
Sopen02g018290 Solanum pennellii HOM05D004266 ORTHO05D005151 1.7e-13 80.5 220 34.5
TAR628G0751 Trochodendron aralioides HOM05D004266 ORTHO05D005151 1.7e-13 80.5 226 33.2
Duzib211G0120 Durio zibethinus HOM05D004266 ORTHO05D005151 2.8e-13 79.7 204 35.8
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 2.8e-13 79.7 202 33.7
FAN20G1662 Fragaria x ananassa HOM05D000915 ORTHO05D005151 3.7e-13 79.3 204 31.9
EL10Ac1g01744 Beta vulgaris HOM05D004266 ORTHO05D005151 1.8e-12 77.0 175 36.0
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 1.8e-12 77.0 195 36.4
PGR042G2606 Punica granatum HOM05D004266 ORTHO05D005151 1.2e-11 74.3 217 31.3
Eucgr.F02667 Eucalyptus grandis HOM05D004266 ORTHO05D005151 1.6e-11 73.9 181 34.3
PSO210G1751 Papaver somniferum HOM05D004266 ORTHO05D005151 2.7e-11 73.2 222 36.5
DCAR_003088 Daucus carota HOM05D004266 ORTHO05D005151 5.9e-11 72.0 205 33.7
PSO170G4898 Papaver somniferum HOM05D004266 ORTHO05D005151 7.7e-11 71.6 222 36.0
AUR62022307 Chenopodium quinoa HOM05D004266 ORTHO05D005151 1.0e-10 71.2 209 33.0
Gorai.010G131000 Gossypium raimondii HOM05D004266 ORTHO05D005151 1.0e-10 71.2 214 33.2
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 1.0e-10 71.2 220 32.3
Peaxi162Scf00089g01727 Petunia axillaris HOM05D004266 ORTHO05D005151 2.2e-10 70.1 200 31.5
Sed0021776 Sechium edule HOM05D004266 ORTHO05D005151 2.9e-10 69.7 215 31.2
Oeu046919.1 Olea europaea HOM05D004266 ORTHO05D005151 3.8e-10 69.3 203 29.1
Gohir.D05G249100 Gossypium hirsutum HOM05D004266 ORTHO05D005151 1.5e-09 67.4 196 32.7
Peaxi162Scf00415g00043 Petunia axillaris HOM05D004266 ORTHO05D005151 1.5e-09 67.4 219 32.9
Cc09_g05020 Coffea canephora HOM05D004266 ORTHO05D005151 4.2e-09 65.9 205 31.7
FAN24G0594 Fragaria x ananassa HOM05D004266 ORTHO05D005151 9.4e-09 64.7 160 33.1
vmacro01509 Vaccinium macrocarpon HOM05D004266 ORTHO05D005151 9.4e-09 64.7 205 31.2
AUR62034933 Chenopodium quinoa HOM05D004266 ORTHO05D005151 1.2e-08 64.3 211 32.2
MELO3C019953.2 Cucumis melo HOM05D004266 ORTHO05D005151 2.1e-08 63.5 211 30.3
MSTRG.21597 Avicennia marina HOM05D004266 ORTHO05D005151 1.4e-07 60.8 220 30.5
Cpa.g.sc26.137 Carica papaya HOM05D004266 ORTHO05D005151 1.8e-07 60.5 193 31.1
ClCG08G008770 Citrullus lanatus HOM05D004266 ORTHO05D005151 3.0e-07 59.7 217 28.6
Sopen09g026800 Solanum pennellii HOM05D004266 ORTHO05D005151 8.8e-07 58.2 125 38.4
CAN.G1802.2 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-06 57.8 162 35.2
Solyc09g065090.2 Solanum lycopersicum HOM05D004266 ORTHO05D005151 2.0e-06 57.0 120 38.3
ECA247G0282 Erigeron canadensis HOM05D004266 ORTHO05D000002 2.6e-06 56.6 205 29.3
Lj7A387T77 Lonicera japonica HOM05D004266 ORTHO05D005151 2.6e-06 56.6 233 28.3
Sc03g0006210 Simmondsia chinensis HOM05D004266 ORTHO05D005151 5.7e-06 55.5 214 31.3
SGA_v2.0_scaffold47G17607 Striga asiatica HOM05D004266 ORTHO05D005151 9.8e-06 54.7 108 41.7


User provided reference genes

Program Settings