Gene: Solyc02g069160.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g069160.3
  • Transcript Identifier Solyc02g069160.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 37119641-37126854 : positive

Gene Family Information

  • ID HOM05D004266
  • #Genes/#Species 166/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g069160.3.1
  • uniprot A0A3Q7F1S8
  • gene_id Solyc02g069160

Descriptions

  • Description RNA-binding protein (AHRD V3.3 *-* G2X1T0_VERDV)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0060968
ISO
PLAZA Integrative Orthologyregulation of gene silencing AT1G71800
GO:0048589
ISO
PLAZA Integrative Orthologydevelopmental growth AT1G71800
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT1G71800
GO:0031123
ISO
PLAZA Integrative OrthologyRNA 3'-end processing AT1G71800
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G71800
GO:0042868
ISO
PLAZA Integrative Orthologyantisense RNA metabolic process AT1G71800
GO:0031124
IEA
GOA DatabasemRNA 3'-end processing
GO:0031124
IEA
InterPromRNA 3'-end processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G71800
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G71800
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR025742 Cleavage stimulation factor subunit 2, hinge domain
IPR026896 Transcription termination and cleavage factor, C-terminal domain
IPR038192 Transcription termination and cleavage factor, C-terminal domain superfamily
Mapman id Description
16.3.1.3.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF64/Rna15