Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.2e-166 589.7 291 100.0
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 8.9e-162 573.5 291 96.6
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 8.9e-162 573.5 291 96.6
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.5e-161 572.8 291 96.2
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.4e-161 571.6 291 96.6
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 3.2e-159 565.1 291 96.2
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.1e-158 562.4 291 94.2
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 3.0e-157 558.5 291 92.4
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-156 556.6 291 92.1
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 2.1e-155 552.4 291 91.4
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.2e-155 550.8 291 90.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 1.8e-154 549.3 290 91.0
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 8.9e-154 547.0 291 89.7
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.2e-153 546.6 291 90.4
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 2.0e-153 545.8 292 91.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.6e-153 545.4 291 90.0
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 5.8e-153 544.3 291 89.0
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 9.9e-153 543.5 291 90.0
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 2.9e-152 542.0 291 89.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 6.4e-152 540.8 288 90.6
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.1e-151 540.0 288 88.9
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.4e-151 538.9 312 84.9
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.2e-151 538.1 291 89.0
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.2e-151 538.1 290 89.0
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 7.1e-151 537.3 291 89.0
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 7.1e-151 537.3 291 89.0
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 7.1e-151 537.3 288 88.9
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-151 537.0 298 87.2
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 88.7
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 88.0
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.2e-150 536.6 288 89.6
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.1e-150 535.8 285 90.5
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 2.1e-150 535.8 291 88.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 87.3
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 3.5e-150 535.0 285 89.8
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.6e-150 534.6 291 87.6
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 4.6e-150 534.6 287 88.9
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.0e-149 533.5 288 88.9
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.0e-149 533.5 291 87.6
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.3e-149 533.1 291 87.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.3e-149 533.1 285 89.5
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.3e-149 533.1 291 86.9
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.7e-149 532.7 288 88.9
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 88.7
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.0e-149 531.9 288 88.5
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.0e-149 531.9 288 88.5
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 3.9e-149 531.6 288 88.9
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 3.9e-149 531.6 288 88.5
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 5.1e-149 531.2 285 89.1
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 87.3
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 8.7e-149 530.4 285 89.1
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 86.6
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 87.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.5e-148 529.6 285 88.8
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 1.5e-148 529.6 288 88.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.5e-148 529.6 288 87.8
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 3.3e-148 528.5 287 87.1
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 5.6e-148 527.7 290 87.6
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 87.3
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 88.0
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 86.6
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.2e-147 526.6 288 87.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 86.9
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.1e-147 525.8 288 87.5
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 85.6
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.8e-147 525.4 296 86.1
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.6e-147 525.0 286 88.1
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 3.6e-147 525.0 290 86.6
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 85.9
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 86.6
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 86.6
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.4e-146 523.1 290 86.6
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.8e-146 522.7 292 86.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 3.1e-146 521.9 291 86.3
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 86.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 6.9e-146 520.8 286 87.1
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 6.9e-146 520.8 288 85.8
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 9.0e-146 520.4 288 86.5
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.2e-145 520.0 286 85.7
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.5e-145 519.6 287 87.1
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 2.0e-145 519.2 288 86.5
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 2.0e-145 519.2 288 86.5
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.4e-145 518.1 318 79.9
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 5.8e-145 517.7 286 87.8
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 7.6e-145 517.3 286 87.4
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.7e-144 516.2 290 86.9
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.7e-144 516.2 291 85.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.8e-144 515.0 289 86.5
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 3.8e-144 515.0 285 85.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 6.4e-144 514.2 273 90.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 6.4e-144 514.2 272 91.9
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-143 512.7 288 85.1
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-143 512.7 288 85.1
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 2.4e-143 512.3 285 87.4
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 5.4e-143 511.1 285 87.0
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 7.1e-143 510.8 285 86.7
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 7.1e-143 510.8 272 90.1
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.6e-142 509.6 276 88.0
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.1e-142 509.2 290 86.2
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.1e-142 509.2 290 85.9
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 2.7e-142 508.8 273 90.5
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 6.0e-142 507.7 272 89.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.7e-141 506.1 289 84.8
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.9e-140 502.7 266 90.6
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.3e-140 501.9 272 88.2
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.3e-139 500.0 288 84.0
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.1e-138 496.9 362 70.2
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 6.9e-138 494.2 279 86.4
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 9.9e-137 490.3 287 85.0
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 1.7e-136 489.6 266 89.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.7e-136 489.6 286 82.2
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.4e-135 485.7 273 85.0
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.4e-135 485.7 298 80.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.4e-135 485.7 269 85.9
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 5.4e-135 484.6 296 81.4
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 5.4e-135 484.6 296 81.4
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 7.1e-135 484.2 266 88.7
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-134 482.6 286 82.2
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.1e-134 482.6 311 77.5
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 6.0e-134 481.1 274 85.8
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.5e-132 476.5 259 87.3
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.9e-132 476.1 253 90.1
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 4.3e-132 474.9 255 89.8
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.6e-131 473.0 253 89.3
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 6.9e-130 467.6 291 79.0
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.4e-127 459.9 271 79.3
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 3.2e-127 458.8 288 79.2
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.2e-127 458.4 297 77.1
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.6e-126 456.4 283 76.3
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.8e-125 453.0 247 87.4
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-124 450.3 254 85.4
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.9e-124 449.5 330 69.7
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.5e-124 449.1 238 89.5
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.3e-124 448.7 281 73.0
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 6.9e-122 441.0 242 87.6
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-120 435.3 290 75.5
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 9.0e-114 414.1 283 70.3
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.6e-113 412.5 390 58.7
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.0e-112 410.6 275 75.6
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.0e-112 408.3 220 89.1
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 8.8e-101 370.9 274 70.1
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.7e-99 366.7 400 52.8
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.1e-98 364.0 190 88.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.7e-96 356.7 198 86.4
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 6.7e-93 344.7 271 67.5
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 2.6e-92 342.8 173 93.6
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.7e-83 313.5 278 59.4
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.7e-80 303.5 244 66.0
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-77 291.2 172 79.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-70 270.0 194 72.2
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 6.8e-69 265.0 261 49.4
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 3.3e-55 219.5 193 63.2
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.9e-51 206.5 131 77.9
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.9e-51 206.5 131 77.9
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 3.6e-38 162.9 142 63.4
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.1e-31 141.4 129 62.0
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.1e-23 114.8 72 69.4
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 7.3e-23 112.1 91 59.3
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 7.3e-23 112.1 66 75.8
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 4.8e-22 109.4 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.8e-22 109.4 88 64.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 4.5e-20 102.8 64 75.0
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 4.6e-17 92.8 237 31.6
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 6.7e-16 89.0 51 76.5
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 6.9e-13 79.0 45 77.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.9e-11 73.6 90 52.2
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.9e-11 73.6 90 52.2
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-09 67.4 46 67.4
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 7.9e-09 65.5 39 84.6


User provided reference genes

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