Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 7.3e-267 923.3 463 100.0
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.1e-229 798.9 462 86.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.6e-226 789.3 453 86.3
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.4e-225 785.4 453 85.7
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.2e-222 775.0 462 82.9
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.5e-216 756.1 462 82.5
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.6e-205 719.5 451 78.0
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.9e-204 714.9 462 77.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.2e-202 709.1 463 78.2
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 6.3e-202 707.6 482 73.7
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.7e-191 672.9 462 74.9
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 8.0e-173 610.9 474 64.8
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.2e-171 607.1 463 66.1
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 4.4e-171 605.1 471 65.0
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 9.8e-171 604.0 464 65.7
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.3e-170 603.6 464 64.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.6e-168 596.7 466 66.1
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 1.6e-168 596.7 472 64.2
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.7e-168 595.9 463 64.4
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 3.5e-168 595.5 468 63.7
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.3e-167 593.6 463 65.7
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.3e-167 592.8 463 64.1
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 8.6e-167 590.9 463 64.1
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.9e-166 589.7 462 63.9
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 3.3e-166 589.0 462 65.2
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 3.3e-166 589.0 462 62.1
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 5.6e-166 588.2 470 64.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 5.6e-166 588.2 463 64.1
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 2.8e-165 585.9 470 64.7
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.8e-165 585.9 467 64.5
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 3.6e-165 585.5 472 63.3
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 3.6e-165 585.5 464 64.0
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 4.7e-165 585.1 470 63.2
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 8.0e-165 584.3 462 63.4
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.1e-164 582.4 462 63.4
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 4.0e-164 582.0 472 62.1
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 5.2e-164 581.6 466 63.3
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.7e-162 576.6 462 62.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 2.2e-162 576.2 470 63.6
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.4e-161 573.5 467 65.1
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 3.2e-161 572.4 463 63.5
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 3.2e-161 572.4 465 63.9
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 4.1e-161 572.0 463 64.1
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 9.2e-161 570.9 446 63.9
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.2e-160 570.5 475 61.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 2.0e-160 569.7 465 64.3
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.7e-160 569.3 465 63.4
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 7.8e-160 567.8 472 62.5
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 1.0e-159 567.4 476 60.5
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.3e-159 566.2 446 63.5
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 3.0e-159 565.8 467 61.5
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 3.9e-159 565.5 470 62.3
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.5e-158 563.5 435 65.3
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.5e-158 563.5 459 62.7
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 3.3e-158 562.4 462 60.4
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.2e-157 560.5 463 61.3
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.2e-157 560.5 459 62.5
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 2.8e-157 559.3 464 60.8
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.6e-157 558.9 466 62.7
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 6.2e-157 558.1 490 60.4
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 6.2e-157 558.1 519 57.0
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.1e-156 557.4 464 60.1
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.8e-156 556.6 465 62.4
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.8e-156 556.6 458 62.7
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 2.3e-156 556.2 475 59.2
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 5.2e-156 555.1 466 62.9
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.2e-155 553.9 462 59.5
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.4e-155 552.4 464 62.3
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.4e-155 552.4 464 62.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 7.5e-155 551.2 464 62.1
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.5e-155 551.2 459 62.5
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 8.3e-154 547.7 472 60.4
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 1.9e-153 546.6 481 58.6
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.4e-153 546.2 477 58.5
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 3.2e-153 545.8 565 52.7
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 4.1e-153 545.4 462 60.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 7.1e-153 544.7 489 59.3
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 4.6e-152 542.0 471 60.5
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.3e-151 540.4 490 57.3
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.7e-151 540.0 480 58.8
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.9e-151 538.9 489 58.5
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 6.6e-151 538.1 507 57.8
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 4.3e-150 535.4 472 59.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.8e-149 532.7 511 55.8
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 5.2e-148 528.5 466 58.4
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 8.9e-148 527.7 472 57.0
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 1.2e-147 527.3 485 57.1
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.7e-146 523.5 441 60.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 2.4e-140 503.1 462 55.4
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 2.1e-136 490.0 492 54.1
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 3.5e-136 489.2 375 66.4
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.8e-133 479.6 485 51.5
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.7e-130 470.3 396 60.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.8e-125 453.0 491 50.7
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.4e-123 446.0 311 69.1
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.3e-117 427.6 349 62.2
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 4.0e-116 422.5 380 57.4
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.0e-116 421.4 464 50.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.0e-114 417.9 464 50.2
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 4.2e-113 412.5 468 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.6e-112 410.6 455 47.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.4e-108 397.5 478 47.5
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 6.7e-103 378.6 359 57.7
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 2.6e-94 350.1 192 80.2
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.2e-93 345.1 197 80.2
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.4e-92 343.6 387 48.6
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.8e-90 336.3 401 49.6
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 6.5e-90 335.5 257 60.3
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.4e-89 334.3 436 45.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 3.2e-89 333.2 258 58.1
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.1e-88 330.5 401 48.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 8.5e-82 308.5 458 40.8
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.2e-81 306.6 172 79.7
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 6.7e-79 298.9 270 62.2
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-70 271.2 294 51.0
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 4.5e-67 259.6 482 35.3
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 2.3e-63 247.3 258 55.4
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.2e-61 240.7 140 75.7
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.8e-60 237.7 456 33.3
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 2.4e-60 237.3 423 35.5
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 9.2e-60 235.3 273 49.1
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.4e-55 221.5 283 48.1
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.4e-52 210.7 192 55.2
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.3e-50 204.9 108 83.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 8.0e-48 195.7 108 78.7
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-47 195.3 235 40.9
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-42 178.7 238 39.1
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.7e-40 169.9 236 45.8
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.7e-40 169.9 92 79.3
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 2.0e-30 137.9 82 74.4
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 3.6e-24 117.1 99 58.6
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 4.0e-23 113.6 104 53.8
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 9.0e-23 112.5 387 24.8
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-22 112.1 453 26.5
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.2e-22 112.1 503 23.1
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 9.3e-20 102.4 62 74.2
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.2e-14 85.5 204 29.4
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.0e-14 84.7 60 61.7
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 5.4e-12 76.6 34 94.1
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 7.4e-09 66.2 33 84.8
Medtr5g035500 Medicago truncatula HOM05D005206 ORTHO05D006219 5.3e-07 60.1 42 71.4
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 7.6e-06 56.2 35 77.1


User provided reference genes

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