Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 0.0e+00 1105.9 563 100.0
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 6.1e-300 1033.5 568 93.0
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 4.5e-295 1017.3 567 91.5
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 6.3e-281 970.3 569 88.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 1.1e-280 969.5 569 87.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.4e-280 969.1 569 87.7
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 5.9e-279 963.8 569 87.0
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.2e-274 949.5 571 86.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.3e-270 935.3 570 85.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 3.5e-263 911.4 495 91.9
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.0e-262 907.5 581 81.9
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 2.5e-261 905.2 581 81.8
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 9.2e-256 886.7 567 79.9
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.2e-252 876.3 569 79.4
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.1e-252 875.5 568 78.9
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 2.8e-252 875.2 569 80.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 4.0e-251 871.3 568 78.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.0e-251 871.3 571 80.7
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.4e-250 868.2 568 78.7
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 8.3e-249 863.6 567 78.3
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 7.1e-248 860.5 574 78.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.8e-247 857.1 567 78.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.7e-246 855.9 570 78.1
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 3.9e-246 854.7 588 76.7
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 6.6e-246 854.0 567 79.0
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.1e-245 853.2 569 77.3
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.5e-245 852.8 549 81.1
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.5e-245 852.8 570 78.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.5e-245 852.0 571 78.5
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.6e-244 849.4 571 79.5
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.8e-243 845.9 567 78.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.1e-243 845.1 573 77.5
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 5.8e-242 840.9 571 76.2
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.2e-241 839.0 569 76.4
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.2e-241 839.0 570 77.5
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.4e-241 837.4 573 76.4
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.4e-240 835.5 574 77.9
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 3.2e-240 835.1 567 77.2
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 9.2e-240 833.6 575 75.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.1e-239 832.4 572 76.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.0e-238 830.1 567 76.5
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.3e-238 829.7 569 77.3
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.3e-238 829.7 583 75.6
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.3e-238 828.9 581 77.1
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 3.0e-238 828.6 571 75.7
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 5.1e-238 827.8 569 77.3
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.8e-236 822.0 575 76.2
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.7e-236 821.2 569 77.2
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.1e-235 818.5 580 75.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 2.6e-234 815.5 570 74.6
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 8.4e-233 810.4 578 75.4
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.4e-232 808.9 570 76.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.2e-231 806.6 573 75.4
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.6e-231 806.2 570 74.6
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 2.7e-231 805.4 570 73.9
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.0e-230 803.5 568 73.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.3e-230 803.1 570 75.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.3e-230 803.1 576 74.8
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.3e-230 802.4 570 75.4
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.9e-230 801.6 572 73.8
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 5.1e-230 801.2 569 72.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-229 800.0 572 73.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.5e-229 799.7 572 73.6
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.5e-229 798.9 572 73.4
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 7.3e-229 797.3 569 74.3
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.6e-228 796.2 671 66.0
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 4.8e-228 794.7 572 73.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.5e-226 789.6 573 74.2
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.2e-225 785.8 528 77.3
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.8e-225 785.0 599 70.3
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.5e-221 773.1 574 71.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.8e-220 768.8 566 72.4
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.7e-220 768.5 632 65.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.7e-220 768.5 576 71.4
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.9e-217 758.8 562 72.4
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.5e-216 754.6 570 69.6
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.3e-214 749.2 558 71.3
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.9e-214 748.4 589 69.8
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 4.3e-213 745.0 567 70.2
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.3e-212 743.4 567 70.2
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.4e-211 740.0 519 76.5
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 5.3e-211 738.0 588 68.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.9e-211 737.6 586 67.2
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 5.8e-210 734.6 554 70.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 5.8e-210 734.6 568 69.0
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.2e-208 728.4 550 70.4
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 5.5e-208 728.0 555 70.3
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.8e-206 723.0 559 69.8
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.3e-206 722.6 572 68.2
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.3e-206 722.6 580 67.9
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 8.7e-206 720.7 735 56.2
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 3.3e-205 718.8 568 68.7
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-205 718.4 569 68.7
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.3e-205 718.4 569 68.7
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.3e-205 718.4 569 68.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 7.4e-205 717.6 556 69.1
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.4e-203 713.4 557 69.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-203 712.2 582 66.2
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.2e-202 710.3 506 72.7
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.0e-202 709.5 569 68.2
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.6e-202 709.1 569 68.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.1e-199 699.5 550 68.2
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.8e-196 688.3 573 68.8
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 7.2e-192 674.5 545 68.8
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 9.1e-187 657.5 568 64.8
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.3e-185 653.7 571 64.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 3.0e-182 642.5 418 78.9
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 5.0e-177 625.2 488 68.2
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.2e-168 595.9 589 59.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.9e-147 526.9 383 72.3
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 5.1e-137 492.3 598 50.2
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-136 491.1 502 56.8
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-136 491.1 502 56.8
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-136 491.1 502 56.8
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-134 484.6 580 50.7
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 6.0e-122 442.2 260 83.1
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.1e-120 438.0 478 56.1
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 4.8e-119 432.6 356 66.6
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-85 321.2 263 68.1
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 5.1e-81 306.2 195 79.0
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 9.1e-78 295.4 161 89.4
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 9.1e-78 295.4 246 66.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 7.7e-77 292.4 551 40.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 5.1e-73 279.6 354 50.3
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.6e-72 277.3 163 84.7
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.3e-71 275.0 333 54.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.5e-69 266.9 194 72.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.6e-66 258.1 164 83.5
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-65 253.8 272 55.1
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.6e-61 241.5 411 41.1
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 8.0e-58 229.2 167 74.3
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.4e-54 217.6 134 77.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.7e-50 203.4 134 73.9
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.7e-47 194.9 414 39.9
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-42 177.6 114 78.1
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.6e-42 177.2 119 83.2
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-40 172.2 178 57.9
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.2e-39 167.9 599 29.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.0e-33 149.1 147 57.1
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-31 141.4 156 53.2
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 6.6e-28 129.8 77 83.1
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 3.6e-26 124.0 156 48.7
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 2.6e-24 117.9 58 98.3
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.3e-23 115.5 75 74.7
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 2.3e-20 104.8 182 37.4
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.8e-18 97.8 69 76.8
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-17 94.7 137 40.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.0e-17 94.0 66 77.3
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 8.9e-17 92.8 68 73.5
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-14 85.5 59 67.8
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 4.1e-14 84.0 117 46.2
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 7.1e-14 83.2 85 49.4
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.1e-12 77.0 57 77.2
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.6e-12 76.6 83 47.0
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.2e-10 72.4 49 79.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 8.9e-09 66.2 64 64.1
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.9e-07 60.5 36 83.3
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 3.2e-06 57.8 68 44.1


User provided reference genes

Program Settings