Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.8e-79 298.5 145 100.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 3.9e-17 92.0 55 78.2
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 8.7e-17 90.9 47 85.1
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 8.7e-17 90.9 47 85.1
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 3.3e-16 89.0 78 59.0
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 7.4e-16 87.8 47 83.0
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.2e-15 86.3 47 80.9
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 2.8e-15 85.9 47 80.9
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.8e-15 85.9 47 80.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.8e-15 85.9 68 60.3
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 3.7e-15 85.5 52 73.1
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.8e-15 85.1 47 78.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 4.8e-15 85.1 57 68.4
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 6.3e-15 84.7 47 78.7
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 8.2e-15 84.3 78 53.8
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 8.2e-15 84.3 47 78.7
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 1.4e-14 83.6 47 78.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.4e-14 83.6 47 76.6
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.8e-14 83.2 47 78.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.8e-14 83.2 57 66.7
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.4e-14 82.8 57 66.7
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.4e-14 82.8 72 58.3
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 3.1e-14 82.4 59 64.4
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 3.1e-14 82.4 59 64.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.1e-14 82.0 57 64.9
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.1e-14 82.0 57 64.9
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 76.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 76.6
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 74.5
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 74.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 74.5
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 4.1e-14 82.0 47 74.5
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.3e-14 81.6 62 61.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.3e-14 81.6 47 74.5
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 5.3e-14 81.6 57 64.9
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 5.3e-14 81.6 45 80.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 6.9e-14 81.3 69 55.1
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 6.9e-14 81.3 62 62.9
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 6.9e-14 81.3 57 66.7
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 9.0e-14 80.9 62 59.7
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 9.0e-14 80.9 47 74.5
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 9.0e-14 80.9 47 74.5
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 9.0e-14 80.9 47 72.3
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.2e-13 80.5 57 63.2
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.2e-13 80.5 57 63.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.2e-13 80.5 57 63.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-13 80.5 57 64.9
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.2e-13 80.5 67 53.7
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.5e-13 80.1 62 59.7
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.5e-13 80.1 57 61.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.5e-13 80.1 57 64.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.0e-13 79.7 76 55.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.0e-13 79.7 76 55.3
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 2.0e-13 79.7 57 64.9
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.0e-13 79.7 57 64.9
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.6e-13 79.3 76 55.3
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 2.6e-13 79.3 57 63.2
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 2.6e-13 79.3 57 63.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 2.6e-13 79.3 47 72.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.4e-13 79.0 76 55.3
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.4e-13 79.0 62 58.1
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 3.4e-13 79.0 45 77.8
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 3.4e-13 79.0 57 61.4
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.4e-13 79.0 45 75.6
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 4.5e-13 78.6 72 55.6
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 5.9e-13 78.2 59 59.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.9e-13 78.2 47 70.2
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 7.7e-13 77.8 80 46.2
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.0e-12 77.4 45 73.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.0e-12 77.4 47 70.2
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.0e-12 77.4 52 65.4
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.3e-12 77.0 81 51.9
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.2e-12 76.3 57 61.4
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.9e-12 75.9 47 68.1
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.9e-12 75.9 46 69.6
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.9e-12 75.9 57 57.9
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.9e-12 75.9 57 59.6
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 3.8e-12 75.5 47 68.1
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 3.8e-12 75.5 89 43.8
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.8e-12 75.5 47 66.0
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 5.0e-12 75.1 47 72.3
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.0e-12 75.1 57 59.6
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 6.5e-12 74.7 57 59.6
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 6.5e-12 74.7 50 68.0
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.5e-12 74.7 67 52.2
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 8.5e-12 74.3 57 57.9
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 8.5e-12 74.3 66 51.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.1e-11 73.9 45 71.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.1e-11 73.9 67 56.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.1e-11 73.9 47 68.1
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.1e-11 73.9 44 72.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.1e-11 73.9 44 72.7
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.4e-11 73.6 46 73.9
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.4e-11 73.6 47 68.1
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.4e-11 73.6 47 66.0
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.4e-11 73.6 47 66.0
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.9e-11 73.2 81 48.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.9e-11 73.2 44 70.5
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.5e-11 72.8 47 66.0
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 2.5e-11 72.8 47 63.8
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 2.5e-11 72.8 47 66.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.2e-11 72.4 43 72.1
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.2e-11 72.0 42 73.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.2e-11 72.0 44 70.5
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 4.2e-11 72.0 39 79.5
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 4.2e-11 72.0 47 66.0
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 4.2e-11 72.0 47 66.0
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.5e-11 71.6 44 70.5
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 5.5e-11 71.6 47 61.7
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.5e-11 71.6 47 61.7
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 5.5e-11 71.6 45 68.9
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 7.2e-11 71.2 47 61.7
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 7.2e-11 71.2 44 70.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 9.4e-11 70.9 42 73.8
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.2e-10 70.5 43 72.1
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.2e-10 70.5 43 67.4
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 2.1e-10 69.7 50 62.0
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.1e-10 69.7 47 61.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 4.6e-10 68.6 66 54.5
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 7.9e-10 67.8 37 78.4
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 7.9e-10 67.8 37 78.4
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 7.9e-10 67.8 37 78.4
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.0e-09 67.4 44 63.6
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.0e-09 67.4 40 75.0
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.4e-09 67.0 44 63.6
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.4e-09 67.0 45 64.4
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.1e-09 65.1 44 61.4
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.7e-09 64.7 48 56.2
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.8e-09 64.3 34 79.4
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.5e-08 63.5 47 63.8
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.3e-08 62.4 45 64.4
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.7e-08 61.6 47 61.7


User provided reference genes

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