Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 6.1e-180 634.0 320 100.0
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 3.1e-75 286.2 217 72.4
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 1.4e-59 234.2 117 96.6
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.5e-56 223.4 117 91.5
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 3.2e-56 223.0 135 83.7
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 7.2e-56 221.9 117 90.6
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 6.1e-55 218.8 120 86.7
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 6.1e-55 218.8 120 86.7
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 2.3e-54 216.9 117 88.0
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.7e-53 212.2 135 79.3
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.7e-53 212.2 135 79.3
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.7e-53 212.2 135 79.3
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.1e-51 208.0 135 78.5
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 5.4e-51 205.7 146 71.9
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 7.0e-51 205.3 117 85.5
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 3.5e-50 203.0 125 80.8
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 4.5e-50 202.6 135 76.3
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 7.8e-50 201.8 135 75.6
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 1.1e-48 198.0 135 74.1
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 1.0e-46 191.4 135 71.9
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 1.5e-45 187.6 134 73.9
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 1.5e-45 187.6 134 73.9
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 5.4e-43 179.1 203 57.6
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 9.2e-43 178.3 92 91.3
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 2.7e-42 176.8 129 72.1
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 7.8e-42 175.3 105 83.8
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.3e-41 173.7 141 65.2
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 7.3e-40 168.7 117 75.2
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 8.0e-39 165.2 126 69.8
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 8.0e-39 165.2 126 69.8
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.4e-37 159.5 117 69.2
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 5.8e-37 159.1 155 58.1
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 1.3e-36 157.9 117 67.5
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 2.2e-36 157.1 125 65.6
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 2.2e-36 157.1 126 67.5
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 8.3e-36 155.2 120 67.5
ATMG00080 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 2.4e-35 153.7 102 74.5
BolSC28t60316H Brassica oleracea HOM05D001987 ORTHO05D004018 2.4e-35 153.7 102 74.5
BraSC48t46331Z Brassica rapa HOM05D001987 ORTHO05D004018 2.4e-35 153.7 102 74.5
Thhalv10001268m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 2.4e-35 153.7 102 74.5
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 5.4e-35 152.5 117 66.7
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.2e-34 151.4 90 80.0
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 3.5e-34 149.8 105 71.4
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 4.6e-34 149.4 74 93.2
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 7.8e-34 148.7 117 66.7
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 2.3e-33 147.1 118 66.1
Solyc09g015860.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.6e-33 145.6 115 66.1
Nitab4.5_0009561g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 2.1e-31 140.6 75 86.7
HanXRQChr01g0013351 Helianthus annuus HOM05D001987 ORTHO05D004018 3.6e-31 139.8 88 77.3
HanXRQChr01g0013341 Helianthus annuus HOM05D001987 ORTHO05D004018 1.1e-30 138.3 88 76.1
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 3.1e-30 136.7 136 57.4
PGSC0003DMG400030936 Solanum tuberosum HOM05D001987 ORTHO05D004018 3.1e-30 136.7 75 85.3
AL5G20250 Arabidopsis lyrata HOM05D001987 ORTHO05D016577 1.2e-29 134.8 105 65.7
Sopen05g027050 Solanum pennellii HOM05D001987 ORTHO05D004018 4.4e-29 132.9 73 86.3
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 1.3e-28 131.3 120 60.0
SabraMtG0007200 Salix brachista HOM05D001987 ORTHO05D004018 3.5e-26 123.2 73 80.8
ClCG08G009700 Citrullus lanatus HOM05D001987 ORTHO05D004018 7.8e-26 122.1 75 80.0
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 5.1e-25 119.4 117 57.3
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 1.1e-24 118.2 117 57.3
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 2.1e-23 114.0 59 89.8
Hund31335 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.8e-22 110.9 57 91.2
DCAR_032447 Daucus carota HOM05D001987 ORTHO05D006514 9.9e-21 105.1 55 89.1
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.3e-20 104.8 83 63.9
Nitab4.5_0002616g0170 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.8e-20 103.2 51 94.1
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 3.8e-20 103.2 112 52.7
Aqoxy4G01609 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 6.4e-20 102.4 53 90.6
Nitab4.5_0000451g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.3e-17 94.7 51 86.3
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.0e-17 93.6 95 55.8
Pp3c2_23477 Physcomitrium patens HOM05D001987 ORTHO05D004018 6.6e-17 92.4 74 62.2
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 3.3e-16 90.1 117 47.9
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.6e-15 86.7 48 87.5
Solyc08g074700.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 4.7e-15 86.3 45 86.7
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 3.1e-14 83.6 43 93.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 1.2e-13 81.6 43 90.7
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 1.2e-13 81.6 43 90.7
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.5e-13 81.3 43 90.7
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 1.5e-13 81.3 43 90.7
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 1.5e-13 81.3 43 90.7
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 5.8e-13 79.3 43 88.4
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 7.6e-13 79.0 43 88.4
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 3.8e-12 76.6 42 88.1
Peaxi162Scf00084g00915 Petunia axillaris HOM05D001987 ORTHO05D004018 3.8e-12 76.6 39 89.7
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 4.9e-12 76.3 43 86.0
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.9e-12 76.3 43 86.0
AagrBONN_evm.TU.Sc2ySwM_117.831 Anthoceros agrestis HOM05D001987 ORTHO05D004018 1.4e-11 74.7 80 50.0
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 1.9e-11 74.3 43 83.7
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.2e-11 73.6 43 83.7
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 7.1e-11 72.4 41 82.9
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.2e-10 71.6 43 81.4
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.2e-10 71.6 43 81.4
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.2e-10 71.6 43 81.4
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.2e-10 71.6 43 81.4
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.2e-10 71.6 43 81.4
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 3.5e-10 70.1 43 79.1
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 3.5e-10 70.1 43 79.1
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 8.7e-09 65.5 144 31.2
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 8.7e-09 65.5 144 31.2
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 8.7e-09 65.5 144 31.2
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 8.7e-09 65.5 144 31.2
PGSC0003DMG400042640 Solanum tuberosum HOM05D001987 ORTHO05D004018 8.7e-09 65.5 31 90.3
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.5e-08 64.7 43 74.4
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 2.5e-08 63.9 43 74.4
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 2.5e-08 63.9 81 53.1
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 3.3e-08 63.5 41 75.6
SGA_v2.0_scaffold245G44435 Striga asiatica HOM05D001987 ORTHO05D006514 4.3e-08 63.2 113 39.8
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 9.6e-08 62.0 40 75.0
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 9.6e-08 62.0 40 75.0
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 9.6e-08 62.0 40 75.0
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 9.6e-08 62.0 40 75.0
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 3.6e-07 60.1 40 72.5
SMO059G0001 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 6.2e-07 59.3 83 37.3
SMO172G0196 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 6.2e-07 59.3 83 37.3
RcHm_v2.0_Chr5g0031171 Rosa chinensis HOM05D001987 ORTHO05D004018 8.1e-07 58.9 74 43.2
FAN11G2273 Fragaria x ananassa HOM05D001987 ORTHO05D004018 1.1e-06 58.5 80 41.2
Nitab4.5_0010033g0070 Nicotiana tabacum HOM05D001987 ORTHO05D004018 1.4e-06 58.2 27 92.6
FvH4_3g18440 Fragaria vesca HOM05D001987 ORTHO05D004018 1.8e-06 57.8 80 41.2
FAN16G3148 Fragaria x ananassa HOM05D001987 ORTHO05D004018 1.8e-06 57.8 80 41.2
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.4e-06 57.4 119 37.0
FAN21G1218 Fragaria x ananassa HOM05D001987 ORTHO05D004018 2.4e-06 57.4 80 41.2
FAN25G2706 Fragaria x ananassa HOM05D001987 ORTHO05D004018 2.4e-06 57.4 80 41.2
QL07p023375 Quercus lobata HOM05D001987 ORTHO05D004018 2.4e-06 57.4 27 88.9
Gohir.A12G024600 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.1e-06 57.0 71 42.3
CiPaw.03G280800 Carya illinoinensis HOM05D001987 ORTHO05D004018 5.3e-06 56.2 74 40.5
Gorai.004G166700 Gossypium raimondii HOM05D001987 ORTHO05D004018 5.3e-06 56.2 74 40.5
PGR111G0010 Punica granatum HOM05D001987 ORTHO05D004018 5.3e-06 56.2 74 39.2
Gohir.1Z049934 Gossypium hirsutum HOM05D001987 ORTHO05D004018 6.9e-06 55.8 71 40.8
Gohir.1Z049902 Gossypium hirsutum HOM05D001987 ORTHO05D004018 9.0e-06 55.5 71 39.4
Gohir.A05G396300 Gossypium hirsutum HOM05D001987 ORTHO05D004018 9.0e-06 55.5 71 40.8
LjContig00318g0015359 Lotus japonicus HOM05D001987 ORTHO05D004018 9.0e-06 55.5 71 40.8
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 9.0e-06 55.5 71 40.8
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 9.0e-06 55.5 71 40.8
Sed0015467 Sechium edule HOM05D001987 ORTHO05D004018 9.0e-06 55.5 74 40.5


User provided reference genes

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