Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.7e-196 689.1 343 100.0
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 2.9e-95 352.8 342 58.5
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 5.0e-95 352.1 342 58.2
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.1e-94 350.9 342 57.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.2e-93 347.4 346 56.9
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 6.7e-92 341.7 342 56.1
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.5e-91 340.5 342 56.1
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 4.4e-91 339.0 333 57.1
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.4e-91 338.2 342 55.6
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 9.7e-91 337.8 342 55.6
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 9.7e-91 337.8 342 55.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.3e-90 337.4 342 56.1
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.7e-90 337.0 333 56.5
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 2.8e-90 336.3 342 55.6
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 2.8e-90 336.3 333 58.0
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 2.8e-90 336.3 333 56.5
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 3.7e-90 335.9 342 55.3
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 3.7e-90 335.9 342 55.3
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 3.7e-90 335.9 342 55.3
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.8e-90 335.5 333 56.8
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 4.8e-90 335.5 342 55.0
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.8e-90 335.5 342 55.0
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.8e-90 335.5 342 55.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.3e-90 335.1 342 55.0
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.3e-90 335.1 342 55.0
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 6.3e-90 335.1 342 58.2
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 8.2e-90 334.7 342 55.0
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 8.2e-90 334.7 342 54.7
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 8.2e-90 334.7 342 55.3
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.4e-89 334.0 342 55.3
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.4e-89 334.0 342 55.3
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.4e-89 334.0 342 55.3
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.4e-89 334.0 333 56.5
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.4e-89 333.2 342 55.3
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 4.1e-89 332.4 342 54.7
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.1e-89 332.4 339 56.0
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 4.1e-89 332.4 342 54.7
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 4.1e-89 332.4 342 54.4
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 4.1e-89 332.4 342 54.7
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 5.3e-89 332.0 342 54.1
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 5.3e-89 332.0 342 54.7
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 7.0e-89 331.6 342 55.0
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 9.1e-89 331.3 342 54.7
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 9.1e-89 331.3 342 54.7
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.2e-88 330.9 342 54.4
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.5e-88 330.5 342 54.4
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 2.6e-88 329.7 333 55.6
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.6e-88 329.7 333 55.6
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 5.9e-88 328.6 342 54.1
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 7.7e-88 328.2 342 54.7
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 7.7e-88 328.2 342 54.4
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.0e-87 327.8 342 54.7
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.0e-87 327.8 342 54.7
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.0e-87 327.8 342 54.1
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.7e-87 327.0 342 54.1
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.7e-87 327.0 342 54.4
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.7e-87 327.0 342 54.4
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.9e-87 326.2 342 54.4
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 2.9e-87 326.2 342 54.1
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.9e-87 326.2 342 53.5
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 6.5e-87 325.1 342 54.4
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.5e-87 325.1 342 53.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 6.5e-87 325.1 336 54.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.5e-87 325.1 354 53.4
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 8.5e-87 324.7 336 53.6
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 8.5e-87 324.7 342 53.8
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 8.5e-87 324.7 342 53.8
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.4e-86 323.9 336 53.9
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.4e-86 323.9 336 53.9
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 1.4e-86 323.9 336 53.9
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.4e-86 323.9 336 53.9
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.9e-86 323.6 342 54.1
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 2.5e-86 323.2 336 53.9
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 3.2e-86 322.8 336 53.6
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.2e-86 322.4 342 53.8
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 4.2e-86 322.4 336 53.3
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.2e-85 320.9 336 53.6
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.6e-85 320.5 342 53.8
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 2.7e-85 319.7 341 53.1
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 2.7e-85 319.7 342 52.9
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.7e-85 319.7 342 53.5
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 3.6e-85 319.3 342 53.8
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 8.0e-85 318.2 336 52.4
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 8.0e-85 318.2 336 52.4
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 8.0e-85 318.2 342 53.2
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.0e-84 317.8 336 52.4
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.0e-84 317.8 336 52.4
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 1.4e-84 317.4 341 52.8
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 3.0e-84 316.2 342 52.9
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 3.9e-84 315.8 342 52.9
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 5.2e-84 315.5 341 52.5
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 1.1e-83 314.3 333 53.5
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 7.4e-83 311.6 336 52.1
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 7.4e-83 311.6 345 53.3
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 7.4e-83 311.6 345 53.3
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.2e-82 310.1 333 53.8
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 2.2e-82 310.1 335 54.0
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 4.8e-82 308.9 333 53.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.4e-81 306.6 333 52.9
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.0e-79 298.9 340 50.9
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.9e-78 297.0 333 50.2
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 3.2e-78 296.2 331 51.1
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 6.1e-77 292.0 331 50.8
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 4.0e-76 289.3 342 48.0
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.8e-74 283.1 544 39.0
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.8e-74 282.3 334 49.4
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.7e-71 273.9 332 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.6e-69 266.2 308 51.6
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.8e-66 255.8 157 83.4
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 2.4e-65 253.4 162 77.2
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 9.1e-65 251.5 331 44.7
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.6e-64 250.8 335 45.4
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 2.7e-64 250.0 164 75.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.1e-61 240.4 155 77.4
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.0e-59 233.8 346 43.9
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 4.5e-56 222.6 336 40.5
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.0e-55 221.5 145 77.2
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 6.1e-53 212.2 311 42.1
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.5e-51 207.6 342 41.5
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.7e-50 204.1 114 88.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 9.2e-49 198.4 107 90.7
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 2.7e-48 196.8 342 38.0
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.7e-48 196.8 121 83.5
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.3e-47 193.7 108 88.0
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 4.3e-46 189.5 109 81.7
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.4e-44 184.5 107 84.1
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 8.9e-44 181.8 97 87.6
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 8.9e-44 181.8 106 80.2
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 8.9e-44 181.8 106 80.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.0e-43 180.6 106 85.8
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.3e-42 177.9 128 68.0
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 3.7e-42 176.4 97 83.5
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 2.4e-41 173.7 84 97.6
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.2e-40 171.4 92 90.2
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 5.6e-38 162.5 95 85.3
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 4.7e-37 159.5 95 84.2
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.8e-36 157.5 97 77.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 5.2e-36 156.0 127 63.0
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.6e-32 142.9 85 77.6
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.9e-30 137.5 74 91.9
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.9e-30 137.5 74 91.9
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.5e-30 137.1 82 78.0
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.6e-30 136.0 82 78.0
Psat4g215560 Pisum sativum HOM05D004689 ORTHO05D322547 3.3e-22 110.2 67 89.6
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.6e-21 107.8 66 74.2
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 3.6e-21 106.7 69 79.7
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.3e-18 98.2 57 78.9
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.3e-14 83.6 113 49.6
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.3e-13 81.6 107 50.5
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 3.2e-09 67.0 38 84.2
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 5.4e-09 66.2 38 81.6
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 3.0e-07 60.5 45 64.4


User provided reference genes

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