Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 3.4e-109 398.3 194 100.0
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.6e-103 379.4 194 93.8
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 4.1e-102 374.8 194 92.8
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 5.0e-100 367.9 187 95.2
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.4e-99 366.3 194 88.1
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.3e-97 359.8 194 87.1
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 85.1
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 86.6
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 84.5
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 86.1
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 85.1
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 86.1
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 86.1
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.4e-94 349.7 193 85.0
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 83.0
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 84.0
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 84.0
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 84.0
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 83.0
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 82.0
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 83.5
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 84.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 83.0
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 83.0
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 83.5
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 82.5
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 82.5
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 83.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.7e-92 342.8 194 82.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 83.0
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.0e-92 341.3 200 82.0
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.4e-91 339.7 194 82.0
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.4e-91 339.7 194 81.4
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 81.4
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.0
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 81.4
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 80.9
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 80.9
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 80.9
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 80.4
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 82.0
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 82.5
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 82.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 80.4
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 80.4
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 80.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 81.4
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 78.9
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 78.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.4
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 79.9
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 8.8e-89 330.5 195 80.5
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 78.4
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 78.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 79.4
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.0e-88 329.3 188 81.9
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 77.3
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 78.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 77.8
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 79.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 79.4
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 77.3
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 77.3
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 77.3
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 77.3
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 77.3
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 77.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 77.3
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.2e-87 325.9 214 74.8
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 76.8
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 6.3e-87 324.3 225 70.7
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 76.8
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 8.2e-87 323.9 187 82.4
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.1e-86 323.6 214 73.4
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.1e-86 323.6 194 77.8
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 76.8
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 76.3
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 77.8
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.4e-86 322.4 214 72.9
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.1e-86 322.0 210 72.9
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 5.3e-86 321.2 194 78.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-85 320.1 194 76.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.4e-85 318.5 235 66.8
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 3.8e-84 315.1 194 73.2
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.6e-82 309.7 178 79.2
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.0e-81 307.0 194 76.8
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.8e-81 306.2 193 76.2
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 8.8e-81 303.9 177 79.7
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 3.3e-80 302.0 194 75.3
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 9.7e-80 300.4 210 69.5
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.2e-79 299.3 194 71.1
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 72.7
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.4e-78 296.6 173 77.5
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 1.8e-78 296.2 161 88.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 4.1e-78 295.0 194 69.6
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 4.1e-78 295.0 297 52.9
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.5e-77 292.0 194 69.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.5e-77 291.6 194 68.6
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 4.5e-77 291.6 194 68.6
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.0e-76 290.4 195 67.7
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 2.9e-76 288.9 274 57.3
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.5e-75 286.6 162 82.1
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 5.2e-73 278.1 283 53.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.8e-71 272.3 160 79.4
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 5.9e-69 264.6 172 70.3
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.5e-56 221.1 120 85.8
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 7.5e-56 221.1 120 86.7
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.4e-54 216.1 134 75.4
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.1e-54 215.7 137 75.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.3e-51 205.3 123 76.4
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 7.3e-51 204.5 123 75.6
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 2.8e-50 202.6 178 54.5
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.6e-50 202.2 130 73.1
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 4.9e-47 191.8 191 47.1
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.2e-45 187.2 114 76.3
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.0e-44 182.6 114 72.8
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 6.6e-44 181.4 112 74.1
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.6e-40 169.5 93 84.9
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.3e-39 167.2 122 64.8
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 8.3e-39 164.5 99 77.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.9e-38 163.3 173 48.0
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 2.5e-35 152.9 89 80.9
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 4.0e-33 145.6 179 42.5
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 5.8e-32 141.7 76 85.5
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 3.7e-31 139.0 88 76.1
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 3.7e-31 139.0 88 76.1
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 8.3e-31 137.9 73 83.6
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 83.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 83.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 83.6
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.6e-29 133.7 71 84.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-25 120.9 64 84.4
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.6e-19 98.6 74 62.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-17 93.2 59 76.3
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.7e-13 79.7 103 44.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-12 77.8 56 67.9
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.0e-12 77.8 83 47.0
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.0e-12 77.8 83 47.0
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 7.3e-11 71.6 40 82.5
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.0e-09 65.9 56 58.9
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.0e-09 65.9 93 38.7


User provided reference genes

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