Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3719g0200 Pisum sativum HOM05D015964 ORTHO05D015958 6.0e-306 1053.5 598 100.0
Psat0s3719g0240 Pisum sativum HOM05D010975 ORTHO05D010903 1.3e-138 497.7 348 79.3
Psat0s3719g0080 Pisum sativum HOM05D015964 ORTHO05D010903 1.8e-92 344.4 507 51.5
Psat0s1818g0080 Pisum sativum HOM05D015964 ORTHO05D015958 2.4e-84 317.4 422 53.1
Psat4g206520 Pisum sativum HOM05D015964 ORTHO05D015958 1.3e-45 188.7 507 39.3
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 4.2e-41 173.7 115 78.3
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 1.2e-38 165.6 115 74.8
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 3.3e-38 164.1 115 73.0
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 5.7e-38 163.3 115 73.0
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 5.7e-38 163.3 115 72.2
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 1.3e-37 162.2 115 72.2
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 2.8e-37 161.0 115 72.2
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 3.7e-37 160.6 115 71.3
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 3.7e-37 160.6 115 71.3
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 3.7e-37 160.6 115 71.3
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 4.8e-37 160.2 115 69.6
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 4.8e-37 160.2 115 69.6
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 4.8e-37 160.2 115 69.6
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 6.3e-37 159.8 115 69.6
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 6.3e-37 159.8 115 70.4
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 8.2e-37 159.5 115 70.4
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 8.2e-37 159.5 115 72.2
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 1.1e-36 159.1 115 71.3
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 1.1e-36 159.1 115 70.4
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 1.1e-36 159.1 115 70.4
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 1.1e-36 159.1 115 70.4
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 1.4e-36 158.7 115 68.7
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 1.4e-36 158.7 115 67.8
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 1.4e-36 158.7 113 71.7
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 1.4e-36 158.7 115 70.4
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 1.4e-36 158.7 115 72.2
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 1.8e-36 158.3 115 68.7
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 1.8e-36 158.3 115 68.7
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 1.8e-36 158.3 115 68.7
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 1.8e-36 158.3 115 71.3
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 1.8e-36 158.3 115 70.4
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 2.4e-36 157.9 139 62.6
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 2.4e-36 157.9 115 71.3
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 2.4e-36 157.9 115 71.3
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 3.1e-36 157.5 115 69.6
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 3.1e-36 157.5 115 69.6
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 3.1e-36 157.5 115 70.4
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 3.1e-36 157.5 115 70.4
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 3.1e-36 157.5 115 69.6
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 70.4
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 67.8
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 68.7
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 67.8
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 70.4
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 68.7
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 4.1e-36 157.1 115 69.6
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 4.1e-36 157.1 130 64.6
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 67.8
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 67.8
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 70.4
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 67.8
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 67.8
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 71.3
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 5.3e-36 156.8 113 69.0
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 5.3e-36 156.8 115 70.4
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 7.0e-36 156.4 115 69.6
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 9.1e-36 156.0 115 69.6
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 9.1e-36 156.0 115 69.6
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 9.1e-36 156.0 115 68.7
Psat0s3719g0160 Pisum sativum HOM05D015964 ORTHO05D010903 9.1e-36 156.0 176 67.6
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 1.2e-35 155.6 115 68.7
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 1.2e-35 155.6 115 68.7
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 1.6e-35 155.2 115 67.8
Cc07_g19600 Coffea canephora HOM05D001013 ORTHO05D004597 1.6e-35 155.2 115 67.8
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 1.6e-35 155.2 115 68.7
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 2.0e-35 154.8 113 68.1
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 2.7e-35 154.5 113 68.1
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 2.7e-35 154.5 113 69.0
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 2.7e-35 154.5 115 67.8
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 3.5e-35 154.1 113 69.0
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 4.5e-35 153.7 113 67.3
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 4.5e-35 153.7 113 69.9
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 5.9e-35 153.3 113 69.0
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 5.9e-35 153.3 113 69.0
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 1.3e-34 152.1 113 69.9
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 1.3e-34 152.1 115 68.7
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 1.3e-34 152.1 115 65.2
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.3e-34 152.1 115 67.0
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 1.7e-34 151.8 115 67.0
Solyc11g065930.3 Solanum lycopersicum HOM05D001013 ORTHO05D004597 1.7e-34 151.8 136 59.6
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 1.7e-34 151.8 136 59.6
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 2.2e-34 151.4 115 69.6
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 2.2e-34 151.4 115 66.1
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 2.9e-34 151.0 115 65.2
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 2.9e-34 151.0 115 65.2
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 3.8e-34 150.6 115 67.0
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 5.0e-34 150.2 113 66.4
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 6.5e-34 149.8 115 64.3
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 6.5e-34 149.8 115 68.7
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 6.5e-34 149.8 115 65.2
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 6.5e-34 149.8 113 68.1
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 8.5e-34 149.4 115 67.8
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 8.5e-34 149.4 115 64.3
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 1.1e-33 149.1 115 64.3
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.1e-33 149.1 115 68.7
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 1.5e-33 148.7 115 67.0
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 4.2e-33 147.1 115 64.3
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 4.2e-33 147.1 115 64.3
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 1.2e-32 145.6 115 63.5
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 4.7e-32 143.7 115 62.6
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 8.0e-32 142.9 115 63.5
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 8.0e-32 142.9 115 62.6
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 5.2e-31 140.2 115 62.6
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 4.4e-30 137.1 115 61.7
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 5.7e-30 136.7 115 60.9
arahy.Tifrunner.gnm1.ann1.V5338L Arachis hypogaea HOM05D001013 ORTHO05D004597 9.8e-30 136.0 100 70.0
SEGI_22026 Sequoiadendron giganteum HOM05D001013 ORTHO05D015958 2.8e-29 134.4 97 70.1
vmacro04203 Vaccinium macrocarpon HOM05D001013 ORTHO05D004597 4.8e-29 133.7 96 70.8
Sc06g0004540 Simmondsia chinensis HOM05D001013 ORTHO05D004597 7.0e-28 129.8 97 69.1
Cre12.g545101 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 3.5e-27 127.5 115 57.4
BcaB04g17722 Brassica carinata HOM05D001013 ORTHO05D015958 1.3e-26 125.6 96 66.7
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 1.3e-26 125.6 97 64.9
FAN25G0972 Fragaria x ananassa HOM05D001013 ORTHO05D004597 2.3e-26 124.8 85 75.3
CBR_g30957 Chara braunii HOM05D001013 ORTHO05D004597 8.6e-26 122.9 118 53.4
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 1.9e-25 121.7 191 40.3
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 4.2e-25 120.6 65 89.2
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 6.8e-23 113.2 140 47.1
AUR62019283 Chenopodium quinoa HOM05D001013 ORTHO05D004597 1.3e-21 109.0 79 69.6
PRCOL_00001493 Prasinoderma coloniale HOM05D001013 ORTHO05D004597 7.8e-19 99.8 122 42.6
A09p01640 Brassica napus HOM05D001013 ORTHO05D004597 4.3e-17 94.0 68 70.6
AT4G37500 Arabidopsis thaliana HOM05D001013 ORTHO05D015958 9.5e-17 92.8 93 54.8
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 4.7e-16 90.5 66 62.1
SHI29743 Sapria himalayana HOM05D001013 ORTHO05D004597 1.4e-15 89.0 147 37.4
arahy.Tifrunner.gnm1.ann1.WY0JR2 Arachis hypogaea HOM05D005693 ORTHO05D015958 7.5e-14 83.2 118 50.8
Cfa025145 Carpinus fangiana HOM05D001013 ORTHO05D004597 1.3e-13 82.4 114 37.7
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.1e-12 79.3 65 61.5
AT3G04390 Arabidopsis thaliana HOM05D001013 ORTHO05D015958 5.4e-12 77.0 77 49.4
arahy.Tifrunner.gnm1.ann1.TZEE0V Arachis hypogaea HOM05D001013 ORTHO05D015958 1.2e-11 75.9 56 71.4
MELO3C016640.2 Cucumis melo HOM05D001013 ORTHO05D004597 1.2e-11 75.9 52 75.0
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 3.5e-11 74.3 52 75.0
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 3.5e-11 74.3 55 70.9
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 4.6e-11 73.9 51 76.5
TPR.G40488 Trifolium pratense HOM05D015964 ORTHO05D010903 2.5e-09 68.2 67 50.7
Psat4g183920 Pisum sativum HOM05D010975 ORTHO05D010903 4.3e-09 67.4 69 46.4
A09p01670 Brassica napus HOM05D000125 ORTHO05D000120 5.2e-07 60.5 44 68.2
MBI01_g42707_MAGBIO Magnolia biondii HOM05D001013 ORTHO05D004597 1.2e-06 59.3 43 60.5
ATR1126G083 Amborella trichopoda HOM05D001013 ORTHO05D004597 4.4e-06 57.4 125 32.0
SHI29744 Sapria himalayana HOM05D001013 ORTHO05D004597 5.8e-06 57.0 44 68.2
Cre11.g467688 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 7.5e-06 56.6 86 43.0


User provided reference genes

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