Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1614g0080 Pisum sativum HOM05D002628 ORTHO05D002785 9.7e-170 600.1 319 100.0
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 6.5e-89 331.6 260 75.8
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 1.5e-82 310.5 257 72.0
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 3.3e-77 292.7 249 69.5
VMungo1383G0087 Vigna mungo HOM05D002628 ORTHO05D002785 4.8e-76 288.9 251 68.5
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 1.1e-75 287.7 252 68.7
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 4.1e-75 285.8 260 66.9
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 7.0e-67 258.5 255 62.4
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 3.3e-61 239.6 286 56.3
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 4.1e-59 232.6 266 59.4
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 2.0e-58 230.3 262 57.3
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 4.5e-58 229.2 261 58.2
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 8.5e-57 224.9 261 56.3
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 1.1e-56 224.6 262 59.2
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 2.7e-55 219.9 263 58.6
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 1.8e-54 217.2 259 54.8
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 8.8e-54 214.9 259 54.4
Psat0s664g0040 Pisum sativum HOM05D002628 ORTHO05D002785 7.0e-51 205.3 143 84.6
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 2.0e-50 203.8 269 55.0
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 2.7e-50 203.4 261 54.4
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 4.5e-50 202.6 260 51.5
VMungo0331G0007 Vigna mungo HOM05D002628 ORTHO05D002785 5.5e-48 195.7 306 48.7
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 9.4e-48 194.9 264 51.5
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 2.1e-47 193.7 305 47.5
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 4.7e-47 192.6 258 53.9
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 6.1e-47 192.2 268 49.3
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 1.0e-46 191.4 259 50.2
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.4e-46 191.0 226 54.9
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 1.8e-46 190.7 253 51.0
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 5.2e-46 189.1 260 50.8
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 6.8e-46 188.7 253 52.2
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 3.4e-45 186.4 302 48.0
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 4.4e-45 186.0 268 49.3
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 1.3e-44 184.5 310 46.1
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.7e-44 184.1 261 51.7
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 1.4e-43 181.0 265 49.4
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 1.4e-43 181.0 276 48.9
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 4.1e-43 179.5 261 49.0
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 2.0e-42 177.2 285 48.8
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.0e-42 177.2 271 49.8
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 2.7e-42 176.8 266 50.4
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 5.9e-42 175.6 261 47.5
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 7.7e-42 175.3 303 43.9
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.3e-41 174.5 256 50.8
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 1.6e-39 167.5 271 47.6
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 2.8e-39 166.8 255 47.8
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.8e-38 164.1 268 46.3
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.3e-38 163.7 259 48.3
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 6.8e-38 162.2 272 46.7
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.2e-37 161.4 275 45.1
Potri.002G243350 Populus trichocarpa HOM05D002628 ORTHO05D002785 2.6e-37 160.2 266 45.1
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 3.4e-37 159.8 222 49.5
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.8e-35 154.1 268 47.0
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.8e-35 154.1 268 46.3
CSS0031811 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 3.2e-35 153.3 258 45.3
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 3.2e-35 153.3 246 46.3
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 7.0e-35 152.1 268 47.0
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 7.0e-35 152.1 257 43.2
CSS0050463 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 1.2e-34 151.4 293 43.3
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 2.3e-33 147.1 273 42.5
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.3e-33 147.1 258 43.8
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 2.8e-31 140.2 253 45.1
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 4.7e-31 139.4 311 40.2
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 4.7e-31 139.4 196 48.5
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 6.2e-31 139.0 258 46.1
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 1.4e-30 137.9 223 47.5
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 3.1e-30 136.7 252 40.9
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 5.2e-30 136.0 294 40.8
PGSC0003DMG400017665 Solanum tuberosum HOM05D002628 ORTHO05D002785 8.9e-30 135.2 250 43.2
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.2e-29 134.8 305 41.6
Ah.15g093990 Amaranthus hybridus HOM05D002628 ORTHO05D002785 1.5e-29 134.4 263 40.7
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 5.8e-29 132.5 256 43.8
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 9.8e-29 131.7 258 43.4
EL10Ac7g17849 Beta vulgaris HOM05D002628 ORTHO05D002785 4.9e-28 129.4 265 42.6
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 8.3e-28 128.6 248 41.9
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 1.2e-26 124.8 253 41.1
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 3.5e-26 123.2 264 43.6
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 6.0e-26 122.5 254 41.3
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.8e-26 122.1 305 40.3
CARHR218580 Cardamine hirsuta HOM05D002628 ORTHO05D002785 1.0e-25 121.7 256 41.0
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 1.5e-24 117.9 288 38.5
DCAR_012651 Daucus carota HOM05D002628 ORTHO05D002785 1.9e-24 117.5 239 41.4
Oeu022247.1 Olea europaea HOM05D002628 ORTHO05D002785 1.9e-24 117.5 253 42.3
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 2.5e-24 117.1 267 40.1
Glyma.18G167833 Glycine max HOM05D002628 ORTHO05D002785 2.1e-23 114.0 95 64.2
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 2.8e-23 113.6 260 40.0
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 3.6e-23 113.2 256 39.8
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 1.1e-22 111.7 265 38.9
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 2.3e-22 110.5 249 39.8
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 3.1e-22 110.2 253 38.3
Gorai.001G187100 Gossypium raimondii HOM05D002628 ORTHO05D002785 4.0e-22 109.8 223 41.3
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 1.2e-21 108.2 264 40.9
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 2.0e-21 107.5 209 43.5
Oeu023092.1 Olea europaea HOM05D002628 ORTHO05D002785 5.8e-21 105.9 249 37.3
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 7.5e-21 105.5 280 37.5
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 9.8e-21 105.1 251 41.0
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 2.2e-20 104.0 198 40.9
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.2e-20 104.0 264 39.8
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 2.9e-20 103.6 255 38.8
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 4.9e-20 102.8 249 39.0
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.1e-19 101.7 260 40.4
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 1.4e-19 101.3 263 38.4
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.9e-19 100.9 259 38.6
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.4e-19 100.5 221 38.9
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 4.1e-19 99.8 262 38.2
Migut.N00620 Erythranthe guttata HOM05D002628 ORTHO05D002785 4.1e-19 99.8 264 37.5
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 7.1e-19 99.0 284 37.0
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 1.6e-18 97.8 267 37.8
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 4.6e-18 96.3 242 38.0
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 4.6e-18 96.3 276 35.5
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 3.9e-17 93.2 244 39.3
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 5.1e-17 92.8 269 34.6
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 8.6e-17 92.0 261 36.8
Actinidia39759 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.1e-16 91.7 231 40.7
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 1.5e-16 91.3 291 34.7
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 1.9e-16 90.9 299 34.8
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 2.5e-16 90.5 225 39.1
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 2.5e-16 90.5 225 39.1
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 3.3e-16 90.1 292 34.6
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 3.3e-16 90.1 245 36.3
Gohir.A07G156950 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.3e-16 90.1 170 41.2
Gohir.D07G163200 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.3e-16 90.1 206 40.8
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 3.3e-16 90.1 241 38.2
Actinidia28152 Actinidia chinensis HOM05D002628 ORTHO05D002785 4.3e-16 89.7 151 43.7
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 2.1e-15 87.4 290 33.8
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 4.7e-15 86.3 240 37.9
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 8.1e-15 85.5 240 38.3
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 3.1e-14 83.6 296 34.8
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 4.0e-14 83.2 295 35.3
Actinidia39763 Actinidia chinensis HOM05D002628 ORTHO05D002785 5.2e-14 82.8 175 41.7
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 3.4e-13 80.1 263 33.5
unitig_37.g12887 Utricularia gibba HOM05D002628 ORTHO05D002785 5.8e-13 79.3 286 33.9
unitig_46.g18239 Utricularia gibba HOM05D002628 ORTHO05D002785 5.8e-13 79.3 296 33.1
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 7.6e-13 79.0 190 42.1
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 2.2e-12 77.4 267 32.2
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 6.4e-12 75.9 265 35.8
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 6.4e-12 75.9 265 35.8
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 8.4e-12 75.5 243 37.4
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 2.4e-11 73.9 297 35.7
C04p42820 Brassica napus HOM05D002628 ORTHO05D002785 9.2e-11 72.0 278 36.3
BolC4t25848H Brassica oleracea HOM05D002628 ORTHO05D002785 9.2e-11 72.0 278 36.3
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 1.2e-10 71.6 241 34.4
ECA236G2127 Erigeron canadensis HOM05D002628 ORTHO05D002785 1.6e-10 71.2 252 34.1
BcaB03g16110 Brassica carinata HOM05D002628 ORTHO05D002785 2.1e-10 70.9 247 37.7
SHI31150 Sapria himalayana HOM05D002628 ORTHO05D002785 2.1e-10 70.9 271 34.7
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 4.6e-10 69.7 229 36.2
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 4.6e-10 69.7 229 36.2
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 4.6e-10 69.7 229 36.2
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 4.6e-10 69.7 248 34.7
DCAR_000525 Daucus carota HOM05D002628 ORTHO05D002785 7.8e-10 68.9 252 32.5
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 1.0e-09 68.6 278 35.6
ECA248G1308 Erigeron canadensis HOM05D002628 ORTHO05D002785 1.0e-09 68.6 322 31.7
THA.LOC104821651 Tarenaya hassleriana HOM05D002628 ORTHO05D002785 1.3e-09 68.2 255 35.3
A04p08930 Brassica napus HOM05D002628 ORTHO05D002785 1.1e-08 65.1 268 36.2
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 1.5e-08 64.7 315 30.2
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 1.5e-08 64.7 315 30.2
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 2.5e-08 63.9 96 46.9
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 1.6e-07 61.2 225 33.8
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 4.7e-07 59.7 125 43.2
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 6.8e-06 55.8 215 29.3


User provided reference genes

Program Settings