Gene: AT3G24870

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G24870
  • Transcript Identifier AT3G24870.1
  • Gene Type Coding gene
  • Location Chr3 : 9075237-9084278 : negative

Gene Family Information

  • ID HOM05D002628
  • #Genes/#Species 260/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G24870.1
  • uniprot F4J7T2

Descriptions

  • Description Helicase/SANT-associated, DNA binding protein
  • Computational description Helicase/SANT-associated, DNA binding protein; FUNCTIONS IN: DNA binding; LOCATED IN: apoplast; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), HSA (InterPro:IPR006562), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Helicase/SANT-associated, DNA binding protein (TAIR:AT3G24880.1); Has 9846 Blast hits to 7198 proteins in 452 species: Archae - 0; Bacteria - 514; Metazoa - 4085; Fungi - 1476; Plants - 1172; Viruses - 23; Other Eukaryotes - 2576 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043981
IMP
Gene Ontologyhistone H4-K5 acetylation1
GO:2000028
IMP
Gene Ontologyregulation of photoperiodism, flowering1
GO:0006325
IEA
GOA Databasechromatin organization
GO:0048510
IMP
GOA Databaseregulation of timing of transition from vegetative to reproductive phase
GO:0009909
IMP
GOA Databaseregulation of flower development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0035267
IDA
GOA DatabaseNuA4 histone acetyltransferase complex
GO:0035267
IEA
Gene OntologyNuA4 histone acetyltransferase complex
GO:0035267
IEA
InterProNuA4 histone acetyltransferase complex
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044798 Chromatin modification-related protein EAF1A/B
IPR014012 Helicase/SANT-associated domain
IPR001005 SANT/Myb domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
12.3.1.1.2.1 Chromatin organisation.post-translational histone modification.histone acetylation.NuA4 histone acetyltransferase complex.assembly platform.platform component EAF1