Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.2e-164 583.2 310 100.0
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.7e-139 499.6 313 86.3
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 6.6e-139 497.7 313 86.6
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 5.4e-133 478.0 312 82.7
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 3.0e-131 472.2 312 80.8
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 7.3e-130 467.6 323 78.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 2.8e-129 465.7 316 80.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 4.0e-128 461.8 316 80.1
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.4e-127 458.8 312 78.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.9e-125 453.0 313 78.9
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 2.7e-124 449.1 316 78.8
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.1e-121 439.5 317 77.3
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 8.1e-121 437.6 316 77.5
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.4e-120 436.8 312 76.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 3.1e-120 435.6 313 76.4
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.6e-119 432.6 315 75.9
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.8e-118 428.7 316 75.9
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.4e-118 427.9 311 75.6
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 8.4e-118 427.6 309 76.4
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 8.4e-118 427.6 316 76.6
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.4e-117 426.8 312 76.0
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 1.9e-117 426.4 317 74.8
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 2.4e-117 426.0 312 73.1
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.4e-117 426.0 315 74.9
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 7.1e-117 424.5 318 71.7
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.2e-116 423.7 313 75.4
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.6e-116 423.3 314 75.8
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 2.1e-116 422.9 317 70.7
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.7e-116 422.5 315 74.6
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 6.0e-116 421.4 313 75.4
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 6.0e-116 421.4 315 73.0
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 6.7e-115 417.9 266 82.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 5.6e-114 414.8 304 75.3
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 7.4e-114 414.5 315 74.6
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 3.7e-113 412.1 337 70.6
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 2.6e-111 406.0 249 85.9
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 1.0e-110 404.1 315 72.4
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.2e-110 402.9 307 73.3
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 2.2e-110 402.9 318 70.4
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 4.9e-110 401.7 326 68.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 6.5e-110 401.4 313 72.5
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.1e-109 400.6 271 76.8
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.4e-109 400.2 283 74.2
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 2.5e-109 399.4 311 71.7
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 3.2e-109 399.1 323 70.9
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.2e-108 397.1 315 72.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.6e-108 396.7 316 71.5
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.7e-108 396.0 313 71.9
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.3e-107 393.7 249 84.7
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 3.9e-107 392.1 268 78.0
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.9e-107 392.1 302 68.5
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 5.1e-107 391.7 271 74.9
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 6.7e-107 391.3 273 75.8
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 6.7e-107 391.3 314 71.7
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 8.7e-107 391.0 268 76.9
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.1e-106 390.6 313 69.3
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.9e-106 389.8 306 69.6
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.6e-105 386.7 308 69.5
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 2.2e-105 386.3 267 76.4
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 2.8e-105 386.0 314 71.7
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 2.4e-104 382.9 265 75.8
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.5e-103 380.2 269 74.7
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.5e-103 380.2 264 76.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.0e-103 379.8 318 66.4
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.0e-103 379.8 247 78.1
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 2.0e-103 379.8 308 69.5
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.6e-103 379.4 267 74.5
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.6e-103 379.4 282 72.7
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 7.6e-103 377.9 311 68.5
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.3e-102 377.1 315 68.9
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.2e-102 376.3 318 67.3
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 8.5e-102 374.4 272 73.2
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.2e-100 370.5 412 55.3
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 1.2e-100 370.5 288 69.4
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.6e-100 370.2 306 66.0
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 6.1e-100 368.2 305 68.2
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 7.9e-100 367.9 290 68.6
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 8.7e-99 364.4 313 65.8
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.5e-98 362.8 257 75.1
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.5e-98 362.8 319 63.9
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-98 362.5 273 72.2
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 4.3e-98 362.1 285 70.2
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 5.7e-98 361.7 274 71.2
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.3e-97 360.5 285 69.8
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.3e-97 360.5 278 66.5
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 4.8e-97 358.6 268 73.9
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 4.5e-95 352.1 275 70.9
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 3.8e-94 349.0 250 72.0
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 5.0e-94 348.6 312 65.4
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.4e-93 347.1 234 75.6
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.6e-92 342.4 266 71.4
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-91 339.7 269 69.1
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.3e-91 339.7 325 56.9
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.3e-89 334.0 227 74.4
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.4e-88 330.5 224 75.0
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.4e-88 330.5 224 75.0
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 6.5e-86 321.6 227 75.3
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 8.5e-86 321.2 249 65.9
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 4.2e-85 318.9 185 86.5
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.7e-84 315.5 234 75.2
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 5.2e-83 312.0 267 67.4
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 3.6e-76 289.3 281 60.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 6.1e-76 288.5 189 81.0
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 9.7e-74 281.2 319 56.1
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 2.8e-73 279.6 259 59.1
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.3e-70 270.8 261 60.2
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 4.2e-69 265.8 174 79.9
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 7.0e-64 248.4 172 76.2
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 7.2e-61 238.4 253 49.4
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.6e-60 236.1 310 46.8
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 7.0e-56 221.9 251 50.6
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.6e-50 203.4 186 58.1
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 9.8e-50 201.4 164 73.2
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 7.5e-42 175.3 128 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.3e-41 174.5 173 48.6
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-37 161.4 125 64.8
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 9.9e-34 148.3 104 80.8
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.3e-33 147.9 191 51.8
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 3.5e-31 139.8 98 73.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 8.6e-30 135.2 120 62.5
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.4e-26 123.2 238 35.7
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.2e-24 116.7 78 76.9
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 1.8e-19 100.9 107 56.1
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.1e-16 91.7 68 60.3
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 2.1e-15 87.4 72 66.7
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.7e-14 84.3 109 50.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-11 74.3 65 66.2
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 6.9e-11 72.4 65 69.2
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 4.2e-08 63.2 35 74.3
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 4.6e-07 59.7 46 71.7
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 7.9e-07 58.9 46 73.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 6.7e-06 55.8 164 35.4


User provided reference genes

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