Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G049400 Prunus persica HOM05D003901 ORTHO05D004511 1.2e-21 105.5 50 100.0
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 9.7e-16 85.9 39 97.4
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 9.7e-16 85.9 39 97.4
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 1.7e-15 85.1 39 94.9
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 2.2e-15 84.7 39 94.9
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 2.2e-15 84.7 39 94.9
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 2.2e-15 84.7 39 94.9
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 2.2e-15 84.7 39 94.9
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 2.2e-15 84.7 39 94.9
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Dinv29461 Davidia involucrata HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
TPR.G7702 Trifolium pratense HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 2.8e-15 84.3 39 92.3
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 89.7
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
FAN25G0558 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 89.7
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 92.3
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 3.7e-15 84.0 39 89.7
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 4.8e-15 83.6 39 89.7
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 4.8e-15 83.6 39 89.7
RcHm_v2.0_Chr1g0317741 Rosa chinensis HOM05D003901 ORTHO05D004511 4.8e-15 83.6 39 92.3
Actinidia24202 Actinidia chinensis HOM05D003901 ORTHO05D004511 6.3e-15 83.2 39 89.7
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 6.3e-15 83.2 39 89.7
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 6.3e-15 83.2 39 89.7
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 8.2e-15 82.8 39 87.2
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 8.2e-15 82.8 39 89.7
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 8.2e-15 82.8 39 87.2
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 8.2e-15 82.8 39 87.2
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 8.2e-15 82.8 39 92.3
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 1.1e-14 82.4 42 83.3
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 1.4e-14 82.0 40 87.5
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 87.2
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 1.4e-14 82.0 46 76.1
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 87.2
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 87.2
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 1.4e-14 82.0 39 89.7
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.8e-14 81.6 39 84.6
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 1.8e-14 81.6 39 89.7
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 1.8e-14 81.6 39 84.6
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 1.8e-14 81.6 39 84.6
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 2.4e-14 81.3 39 87.2
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 3.1e-14 80.9 39 87.2
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 3.1e-14 80.9 39 87.2
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 3.1e-14 80.9 39 87.2
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 3.1e-14 80.9 39 87.2
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 3.1e-14 80.9 39 87.2
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 4.1e-14 80.5 39 84.6
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 4.1e-14 80.5 39 84.6
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 5.3e-14 80.1 36 94.4
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 5.3e-14 80.1 39 84.6
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 5.3e-14 80.1 46 73.9
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 5.3e-14 80.1 39 84.6
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 5.3e-14 80.1 41 82.9
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 84.6
Aqoxy2G01563 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 84.6
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 9.1e-14 79.3 41 80.5
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 9.1e-14 79.3 39 87.2
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 1.2e-13 79.0 39 82.1
Lj1A234G35 Lonicera japonica HOM05D003901 ORTHO05D004511 1.2e-13 79.0 39 87.2
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 1.2e-13 79.0 39 84.6
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.5e-13 78.6 39 82.1
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.5e-13 78.6 39 84.6
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 1.5e-13 78.6 41 78.0
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 1.5e-13 78.6 39 87.2
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 1.5e-13 78.6 39 87.2
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 2.0e-13 78.2 39 84.6
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 2.0e-13 78.2 39 84.6
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 2.6e-13 77.8 39 82.1
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 2.6e-13 77.8 39 82.1
CDE06G1438 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 3.4e-13 77.4 39 84.6
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 3.4e-13 77.4 39 84.6
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 3.4e-13 77.4 39 84.6
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 3.4e-13 77.4 39 84.6
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 5.9e-13 76.6 39 82.1
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 7.7e-13 76.3 41 80.5
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.3e-12 75.5 39 87.2
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 1.7e-12 75.1 39 79.5
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
Sp5g16720 Schrenkiella parvula HOM05D003901 ORTHO05D004511 2.2e-12 74.7 39 79.5
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 5.0e-12 73.6 39 79.5
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 2.5e-11 71.2 39 71.8
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 2.5e-11 71.2 39 71.8
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 5.5e-11 70.1 40 77.5
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 5.5e-11 70.1 39 71.8
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 5.5e-11 70.1 39 71.8
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 5.5e-11 70.1 39 71.8
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 5.5e-11 70.1 39 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 2.1e-10 68.2 41 68.3
SEGI_08454 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 2.1e-10 68.2 37 73.0
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 6.1e-10 66.6 45 62.2
Actinidia37332 Actinidia chinensis HOM05D003901 ORTHO05D004511 7.4e-08 59.7 26 100.0
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 9.7e-08 59.3 26 96.2
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.7e-07 58.5 35 74.3
SGA_v2.0_scaffold21G09652 Striga asiatica HOM05D003901 ORTHO05D051379 8.2e-07 56.2 35 71.4
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 2.4e-06 54.7 41 56.1


User provided reference genes

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