Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.2e-232 807.4 414 100.0
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 5.4e-221 770.8 414 94.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.2e-220 769.6 414 94.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-215 752.3 414 91.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-211 738.4 414 89.4
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.9e-211 738.0 414 89.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-211 737.6 414 89.1
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-210 736.5 414 89.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.9e-210 735.7 414 89.1
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.4e-207 724.9 414 88.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.9e-206 721.1 414 87.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 8.4e-206 720.3 414 87.4
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 8.4e-206 720.3 414 87.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.9e-205 719.2 414 87.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 5.4e-205 717.6 416 86.8
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 7.9e-204 713.8 409 87.8
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.3e-203 713.0 414 86.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.7e-203 712.6 410 87.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 3.9e-203 711.4 414 86.5
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 6.6e-203 710.7 414 85.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 9.6e-202 706.8 414 86.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.1e-201 705.7 414 86.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 4.8e-201 704.5 414 86.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.0e-200 701.4 411 85.4
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 4.5e-199 698.0 413 85.2
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.7e-198 696.0 413 85.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.2e-198 695.7 414 83.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.9e-198 695.3 414 84.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 8.4e-198 693.7 414 83.6
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 83.8
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 7.1e-197 690.6 413 83.3
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 83.6
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.6e-196 689.5 412 84.2
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.6e-196 689.5 445 80.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.7e-196 688.7 414 83.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.7e-196 688.7 412 83.3
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 3.5e-196 688.3 411 83.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.0e-196 687.6 414 83.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.3e-195 686.4 409 82.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.7e-195 684.1 414 82.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 6.7e-195 684.1 409 84.8
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.9e-194 682.6 413 82.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 82.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 81.9
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 82.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 9.6e-194 680.2 414 82.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 4.8e-193 677.9 413 82.3
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 6.2e-193 677.6 414 81.4
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 81.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 81.6
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 81.2
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.4e-192 675.6 413 82.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.1e-192 675.2 413 82.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.3e-192 674.5 411 82.5
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 81.6
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.5e-191 672.9 411 82.2
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.6e-191 672.2 414 81.2
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 80.7
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 81.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 2.2e-190 669.1 415 81.4
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.2e-190 669.1 413 82.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.5e-189 665.6 413 81.8
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 4.2e-189 664.8 426 79.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 7.1e-189 664.1 426 79.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 7.1e-189 664.1 426 79.1
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.0e-188 661.0 410 82.4
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 79.2
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 79.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.9e-186 656.0 413 79.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 9.6e-186 653.7 413 78.7
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.3e-185 653.3 414 79.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.6e-185 652.9 414 78.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.6e-185 652.9 411 79.1
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 78.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.1e-184 650.2 411 79.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.9e-184 647.5 415 79.0
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.4e-183 645.2 420 77.4
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.6e-183 644.0 420 77.6
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.0e-182 643.7 414 78.5
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.9e-182 642.1 438 75.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.0e-179 633.6 415 77.8
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 6.7e-179 630.9 415 77.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-178 628.6 415 76.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 7.4e-178 627.5 414 78.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.3e-177 626.7 375 84.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.3e-177 626.7 429 75.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.2e-177 625.9 371 85.2
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.8e-177 625.5 413 73.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.3e-176 621.3 416 76.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.6e-172 608.2 406 76.6
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.8e-168 596.3 410 74.4
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.4e-168 595.9 414 73.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 6.5e-166 587.8 412 74.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.6e-164 582.0 410 71.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 8.8e-163 577.4 371 79.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.8e-161 572.4 410 68.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.7e-161 572.0 485 66.0
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-159 565.8 418 70.1
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.1e-157 560.5 326 86.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.0e-150 535.0 411 68.4
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 5.0e-150 535.0 398 66.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.4e-146 522.3 405 61.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-144 516.5 281 91.1
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-143 513.8 281 90.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 4.5e-143 511.9 406 63.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 7.2e-141 504.6 305 81.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.4e-141 504.2 296 83.8
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.8e-127 458.0 257 89.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.6e-118 428.3 285 75.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 7.3e-117 424.9 256 81.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.0e-115 419.1 314 69.7
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-115 418.3 313 68.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 4.4e-106 389.0 284 69.7
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-104 382.9 292 72.3
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.7e-102 377.1 409 49.6
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-88 331.3 191 88.0
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.8e-81 306.2 205 75.1
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-80 302.8 238 65.5
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.7e-76 289.7 182 77.5
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-72 276.9 199 70.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.2e-71 274.6 173 79.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 8.7e-70 268.5 220 66.4
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-66 255.4 204 66.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 5.0e-65 252.7 401 37.4
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.2e-57 227.3 131 87.0
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 5.0e-57 226.1 400 34.0
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 7.2e-56 222.2 321 36.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.8e-52 210.3 126 81.0
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-48 196.1 199 57.3
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-46 191.8 121 73.6
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.5e-42 176.8 177 54.8
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.7e-42 175.6 161 60.2
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-41 174.1 102 78.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.3e-38 164.1 414 31.9
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 9.1e-35 152.1 83 84.3
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.6e-34 151.4 114 64.9
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.2e-32 143.7 80 86.2
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.6e-31 141.4 107 62.6
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-26 124.0 117 60.7
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.2e-18 98.6 127 54.3
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.6e-18 98.2 143 48.3
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 3.5e-18 97.1 101 56.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.9e-18 96.3 157 38.9
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.0e-17 95.5 51 90.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.5e-16 91.7 146 46.6
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-13 82.0 54 85.2
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-12 77.0 50 76.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-11 75.1 55 69.1
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.9e-10 69.7 67 58.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 7.8e-10 69.3 81 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.5e-08 64.3 38 81.6


User provided reference genes

Program Settings