Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 5.9e-152 541.2 348 100.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.7e-133 478.4 334 82.9
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 8.2e-130 467.6 335 82.7
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 1.2e-128 463.8 332 86.1
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 5.0e-127 458.4 349 83.7
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 8.5e-127 457.6 344 80.2
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.5e-126 456.8 332 84.3
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.5e-126 456.1 344 79.7
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.5e-126 456.1 352 81.2
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.6e-125 453.4 352 81.0
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.3e-124 449.5 239 93.3
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.0e-124 448.7 349 83.4
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 5.2e-124 448.4 239 93.3
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.0e-123 446.4 334 83.2
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.0e-123 446.4 333 76.9
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.3e-122 443.7 239 91.2
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 2.8e-122 442.6 239 91.6
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 2.8e-122 442.6 239 91.6
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 2.8e-122 442.6 330 86.1
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 2.8e-122 442.6 330 81.8
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 6.3e-122 441.4 360 79.4
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.1e-121 440.7 239 90.8
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.1e-121 440.7 239 92.1
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 1.4e-121 440.3 359 74.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.4e-121 440.3 349 82.5
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.8e-121 439.9 239 90.4
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 2.4e-121 439.5 333 81.4
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.1e-121 439.1 240 91.7
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 3.1e-121 439.1 239 91.6
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 4.1e-121 438.7 348 77.3
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 9.1e-121 437.6 239 90.8
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.2e-120 437.2 239 90.4
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.2e-120 437.2 239 91.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.2e-120 437.2 239 91.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.0e-120 436.4 240 90.8
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 2.0e-120 436.4 336 77.7
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 2.0e-120 436.4 237 91.6
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 4.5e-120 435.3 339 84.1
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 7.7e-120 434.5 239 90.0
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.7e-119 433.3 239 89.5
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.9e-119 432.6 342 77.2
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 3.8e-119 432.2 239 90.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 5.0e-119 431.8 239 89.1
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 6.5e-119 431.4 239 90.0
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.5e-118 430.3 333 79.9
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 235 91.5
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 347 78.1
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 1.9e-118 429.9 239 89.5
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.2e-118 429.1 347 77.5
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 4.2e-118 428.7 241 89.6
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 5.5e-118 428.3 240 88.3
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.6e-117 426.8 241 89.2
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.7e-117 426.0 348 76.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 6.1e-117 424.9 334 81.7
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 6.1e-117 424.9 239 88.3
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.0e-116 424.1 347 77.2
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.0e-116 424.1 239 88.7
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.3e-116 422.9 241 89.2
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 3.0e-116 422.5 239 87.9
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 4.0e-116 422.2 228 91.2
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.5e-115 420.2 222 93.7
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.6e-115 419.5 241 88.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 4.4e-115 418.7 235 90.2
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 4.4e-115 418.7 332 78.6
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 4.4e-115 418.7 242 88.4
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 4.4e-115 418.7 242 88.4
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.3e-114 417.2 350 80.6
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 1.7e-114 416.8 220 93.2
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.4e-113 413.7 311 76.5
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 2.4e-113 412.9 332 82.2
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 2.4e-113 412.9 332 78.6
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.1e-113 412.5 349 77.7
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.1e-113 412.5 349 77.7
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 4.1e-113 412.1 332 78.3
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.2e-112 410.6 228 88.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.7e-112 409.5 349 77.4
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.7e-112 409.5 349 79.7
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 3.5e-112 409.1 228 88.2
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 4.5e-112 408.7 220 91.4
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.7e-111 406.8 235 86.8
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.7e-111 406.8 220 90.9
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 7.3e-110 401.4 228 87.3
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 9.5e-110 401.0 228 86.8
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.2e-109 400.6 241 82.6
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.6e-109 400.2 224 87.9
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 4.7e-109 398.7 228 86.4
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.7e-109 398.7 333 75.4
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.0e-108 397.5 426 62.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.0e-108 396.0 233 86.3
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 4.0e-108 395.6 236 84.7
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 4.0e-108 395.6 232 84.9
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 5.2e-108 395.2 230 84.8
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 2.0e-107 393.3 228 84.6
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 2.0e-107 393.3 228 84.6
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 2.6e-107 392.9 228 84.6
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 2.6e-107 392.9 228 84.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 4.4e-107 392.1 398 64.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 1.3e-106 390.6 228 85.1
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.7e-106 390.2 240 83.8
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 8.3e-106 387.9 208 93.3
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 9.2e-105 384.4 242 80.2
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.7e-103 380.2 241 80.1
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 2.3e-103 379.8 232 80.2
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.4e-99 365.5 241 77.2
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 4.7e-93 345.5 305 79.7
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.6e-91 339.7 231 76.2
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.3e-90 337.4 228 77.2
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.9e-90 336.3 181 91.7
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.3e-87 327.4 229 72.1
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 5.6e-86 322.0 239 69.9
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.8e-84 317.0 342 53.8
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 3.7e-82 309.3 175 89.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 6.2e-77 292.0 567 37.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 4.0e-76 289.3 219 65.3
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 4.4e-75 285.8 175 83.4
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 4.4e-75 285.8 247 65.6
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 2.2e-74 283.5 333 64.3
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.5e-70 270.8 189 70.9
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.6e-69 266.2 207 69.6
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.5e-67 260.8 150 86.0
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.9e-62 243.8 132 91.7
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 1.6e-61 240.7 227 77.1
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.8e-59 232.3 225 56.9
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.1e-54 218.0 195 63.1
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 4.8e-53 212.6 107 97.2
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.8e-52 210.7 107 97.2
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.4e-52 210.3 108 96.3
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 3.1e-52 209.9 241 67.6
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.2e-50 203.8 219 74.9
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 9.3e-49 198.4 108 87.0
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 9.3e-49 198.4 135 76.3
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.1e-48 197.2 107 89.7
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.7e-47 192.2 106 90.6
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.1e-46 191.4 106 86.8
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 9.0e-44 181.8 92 94.6
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 5.9e-43 179.1 108 83.3
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 2.2e-42 177.2 95 92.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.9e-41 174.1 95 91.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 7.9e-40 168.7 127 68.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.3e-38 163.3 91 86.8
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 9.7e-38 161.8 185 64.3
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.1e-32 142.5 71 94.4
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.1e-32 142.5 71 94.4
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 7.4e-30 135.6 83 79.5
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 4.8e-21 106.3 58 87.9
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.4e-20 104.8 90 65.6
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 7.7e-19 99.0 119 55.5
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 3.2e-17 93.6 154 66.2
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 1.5e-14 84.7 130 65.4
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.7e-10 71.2 103 47.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.0e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.5e-10 68.9 38 86.8
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 4.2e-09 66.6 154 67.5
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.2e-07 59.7 45 64.4
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 2.0e-06 57.8 37 78.4


User provided reference genes

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