Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 9.0e-174 613.6 337 100.0
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.1e-163 580.1 337 93.5
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.3e-160 568.5 337 92.6
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.3e-158 561.2 337 90.8
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.3e-158 561.2 338 92.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.0e-158 560.5 337 90.5
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 9.0e-158 560.5 337 90.5
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.5e-157 559.7 337 90.8
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.6e-157 558.9 337 91.1
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 5.9e-157 557.8 337 91.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.3e-156 556.6 338 89.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.3e-156 556.6 337 89.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 6.5e-156 554.3 337 90.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 5.5e-155 551.2 337 89.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 7.2e-155 550.8 337 89.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.2e-154 550.1 337 89.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.1e-154 549.3 337 85.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.6e-154 548.5 337 89.3
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 4.6e-154 548.1 337 88.7
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.1e-154 547.7 337 88.7
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.8e-153 546.2 339 89.1
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.8e-153 546.2 337 88.7
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.3e-153 545.8 337 89.0
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 88.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 88.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 88.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 87.8
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.1e-152 543.5 337 88.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.0e-152 542.7 337 88.4
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.0e-152 542.7 337 89.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.0e-152 542.7 338 87.6
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.5e-152 542.3 338 85.2
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.5e-152 542.3 341 88.6
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 3.3e-152 542.0 349 87.1
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 87.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 7.4e-152 540.8 338 85.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-151 540.0 338 88.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.7e-151 539.7 338 84.9
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.7e-151 539.7 338 87.0
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.2e-151 539.3 338 88.5
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 86.9
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.4e-150 536.6 338 86.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.8e-150 536.2 337 87.5
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.2e-149 533.5 337 87.5
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.5e-149 533.1 336 86.6
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.5e-149 533.1 336 86.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.0e-149 532.7 340 86.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 2.6e-149 532.3 353 85.6
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 86.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 88.1
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.7e-148 529.6 338 86.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 337 80.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 3.8e-148 528.5 338 87.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 87.2
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.4e-147 526.6 337 88.1
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.9e-147 526.2 340 87.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 85.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 5.5e-147 524.6 355 83.4
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 5.5e-147 524.6 355 83.4
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 87.1
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.1e-146 522.7 339 87.0
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.1e-146 522.7 338 86.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.1e-146 522.7 338 86.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.7e-146 521.5 338 86.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 4.7e-146 521.5 338 86.4
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 7.9e-146 520.8 337 85.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 7.9e-146 520.8 372 79.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 86.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 85.8
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.0e-144 516.2 321 87.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.6e-144 515.8 359 82.7
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 5.7e-144 514.6 339 84.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 7.4e-144 514.2 338 84.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 7.4e-144 514.2 338 84.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 7.4e-144 514.2 337 84.9
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 9.7e-144 513.8 346 84.1
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.8e-143 512.3 337 86.9
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.8e-143 511.5 330 85.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 6.3e-143 511.1 339 84.4
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 8.2e-143 510.8 330 87.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.4e-142 510.0 349 83.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 7.0e-142 507.7 337 82.5
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.5e-141 506.5 365 79.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 4.5e-141 505.0 347 81.6
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 84.9
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.0e-140 503.8 366 80.6
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.0e-140 503.8 366 80.6
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.7e-140 503.1 333 85.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 6.5e-140 501.1 321 86.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.5e-139 500.0 338 83.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.5e-139 498.0 377 76.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 5.5e-139 498.0 337 78.0
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 5.5e-139 498.0 337 83.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 7.2e-139 497.7 321 86.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 7.2e-139 497.7 352 80.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.8e-137 493.0 337 81.0
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.0e-137 491.9 325 85.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.0e-137 491.9 325 85.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 8.8e-137 490.7 349 80.8
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.1e-136 490.3 340 77.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.5e-136 490.0 368 77.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 7.4e-136 487.6 337 80.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 8.2e-135 484.2 337 79.5
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.9e-132 475.7 305 88.9
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 5.5e-131 471.5 337 72.7
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 3.4e-128 462.2 338 79.3
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.4e-128 461.8 337 78.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 3.6e-122 442.2 284 87.3
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 5.2e-121 438.3 352 72.7
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.9e-119 431.8 334 77.8
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 8.3e-119 431.0 516 55.0
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 3.8e-116 422.2 274 89.1
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.7e-114 415.2 339 76.1
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.3e-113 412.9 224 88.4
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 3.3e-107 392.5 321 74.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.5e-104 383.6 320 75.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.7e-100 370.2 337 68.2
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 3.9e-100 369.0 255 85.1
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.3e-95 351.3 277 72.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.3e-92 343.2 337 65.3
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.9e-88 327.8 381 47.8
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.9e-83 313.5 330 53.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.2e-81 305.4 147 95.9
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.8e-66 256.5 183 70.5
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.4e-65 254.2 211 76.8
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.6e-61 240.7 326 45.1
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.8e-52 210.7 116 84.5
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.3e-50 202.2 165 71.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.5e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-38 164.9 91 87.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.1e-37 160.6 90 95.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.0e-35 154.1 90 90.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-22 111.7 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-22 110.5 64 92.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.8e-18 96.3 233 30.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 6.3e-18 95.9 201 28.9
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 85 78.8
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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