Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 2.1e-106 389.0 196 100.0
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 9.8e-96 353.6 196 90.3
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 4.8e-95 351.3 196 90.8
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.1e-94 348.6 192 91.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.1e-94 348.6 192 91.1
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.0e-94 347.4 192 90.6
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 7.0e-94 347.4 197 91.4
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 4.0e-89 331.6 192 84.9
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 3.4e-88 328.6 193 83.9
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 2.4e-86 322.4 195 84.1
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 2.4e-86 322.4 194 84.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 7.0e-86 320.9 191 82.7
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 9.2e-86 320.5 200 81.0
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 9.2e-86 320.5 193 84.5
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 4.5e-85 318.2 193 82.9
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 5.9e-85 317.8 194 83.0
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.0e-84 317.0 197 80.7
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.9e-84 315.5 194 81.4
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 5.0e-84 314.7 197 81.7
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 8.6e-84 313.9 191 82.7
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 8.6e-84 313.9 196 78.1
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.5e-83 313.2 193 80.8
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.5e-83 313.2 193 80.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.5e-83 313.2 194 78.4
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 1.9e-83 312.8 194 81.4
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.5e-83 312.4 193 81.3
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 3.3e-83 312.0 194 80.4
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 5.6e-83 311.2 192 81.2
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 5.6e-83 311.2 194 79.4
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 5.6e-83 311.2 194 78.9
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 7.3e-83 310.8 191 81.2
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.2e-82 310.1 191 80.6
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 2.8e-82 308.9 195 80.0
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 3.6e-82 308.5 192 79.7
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 3.6e-82 308.5 194 77.8
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 4.7e-82 308.1 194 78.4
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 4.7e-82 308.1 191 80.1
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 6.1e-82 307.8 194 77.8
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 6.1e-82 307.8 194 78.9
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 6.1e-82 307.8 191 79.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 8.0e-82 307.4 202 77.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 8.0e-82 307.4 191 80.1
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 1.4e-81 306.6 191 80.1
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 2.3e-81 305.8 195 77.9
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 4.0e-81 305.1 194 78.9
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 8.9e-81 303.9 200 78.0
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 8.9e-81 303.9 191 79.6
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 3.4e-80 302.0 189 78.8
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 4.4e-80 301.6 189 76.7
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 5.8e-80 301.2 194 79.4
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 7.5e-80 300.8 195 77.4
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 7.5e-80 300.8 190 78.9
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.3e-79 300.1 192 77.6
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.7e-79 299.7 192 78.1
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.7e-79 299.7 194 78.4
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.7e-79 299.7 192 76.6
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.9e-79 298.9 192 77.6
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 2.9e-79 298.9 198 76.8
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 4.9e-79 298.1 190 78.9
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 4.9e-79 298.1 190 78.9
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 8.3e-79 297.4 245 65.3
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 1.1e-78 297.0 245 65.3
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 4.1e-78 295.0 188 77.7
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 4.1e-78 295.0 220 71.4
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 4.1e-78 295.0 193 74.1
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 5.4e-78 294.7 189 77.8
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 7.0e-78 294.3 177 83.1
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.2e-77 293.5 186 81.2
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 2.0e-77 292.7 189 77.8
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.6e-77 291.6 189 77.2
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 4.6e-77 291.6 193 77.7
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 6.0e-77 291.2 189 76.7
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 6.0e-77 291.2 186 79.6
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 1.7e-76 289.7 187 77.5
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.7e-76 289.7 196 76.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 1.7e-76 289.7 190 77.4
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 5.0e-76 288.1 182 78.6
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 6.6e-76 287.7 185 76.8
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.9e-75 286.2 187 75.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.9e-75 286.2 199 74.4
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.3e-75 285.0 191 74.3
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 7.3e-75 284.3 205 73.2
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 2.8e-74 282.3 191 77.0
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 8.0e-74 280.8 199 71.9
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.3e-71 273.5 191 75.4
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.4e-70 270.0 191 73.3
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 4.1e-70 268.5 163 80.4
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 2.7e-69 265.8 189 68.3
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.3e-67 258.5 192 72.9
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 6.8e-65 251.1 164 74.4
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 7.5e-64 247.7 189 66.1
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 2.4e-62 242.7 185 65.4
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.3e-60 236.9 185 63.8
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.3e-60 236.1 149 77.9
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 5.6e-59 231.5 192 65.1
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 8.1e-58 227.6 164 70.7
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.8e-57 226.5 191 62.8
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 4.4e-56 221.9 137 80.3
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.9e-51 206.5 258 51.2
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 4.0e-49 198.7 129 77.5
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 2.0e-48 196.4 109 89.0
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 9.9e-48 194.1 121 81.0
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 6.4e-47 191.4 141 69.5
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-46 190.7 113 82.3
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 9.3e-46 187.6 136 69.9
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 3.5e-45 185.7 109 85.3
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 1.4e-41 173.7 116 73.3
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 9.9e-40 167.5 187 49.7
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 3.5e-37 159.1 86 88.4
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.3e-36 156.4 108 75.0
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 6.7e-36 154.8 199 46.7
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 4.3e-35 152.1 102 74.5
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 9.6e-35 151.0 141 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 5.8e-32 141.7 132 55.3
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.4e-30 137.1 140 60.7
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.2e-22 109.0 62 83.9
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 7.1e-22 108.2 132 48.5
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.3e-18 97.4 194 34.0
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.4e-17 94.0 79 55.7
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.5e-14 83.2 79 51.9
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 4.2e-14 82.4 52 75.0
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.2e-13 80.9 109 45.9
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 2.2e-10 70.1 51 64.7
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.2e-06 55.8 52 50.0
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 7.2e-06 55.1 50 54.0


User provided reference genes

Program Settings