Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.3e-151 539.7 268 100.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 8.6e-103 377.5 364 61.0
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.4e-99 365.2 364 59.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.4e-98 361.3 329 62.0
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.0e-96 354.8 364 56.6
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-95 353.2 363 56.5
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-95 353.2 363 56.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.0e-95 352.4 364 56.6
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 5.6e-94 348.2 364 55.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 9.6e-94 347.4 364 56.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.7e-93 345.1 364 55.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.7e-88 329.3 364 54.1
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 3.6e-85 318.9 364 52.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 8.1e-85 317.8 364 52.7
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.4e-84 317.0 364 52.7
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 4.0e-84 315.5 357 53.5
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 6.9e-84 314.7 362 51.4
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-83 313.5 364 51.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.6e-83 312.8 367 51.5
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 9.9e-83 310.8 364 50.3
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.3e-82 310.5 380 50.3
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.9e-82 309.3 365 51.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 6.4e-82 308.1 363 51.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.1e-81 307.4 364 50.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.4e-81 306.2 364 50.0
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.2e-81 305.8 364 50.3
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 4.2e-81 305.4 313 57.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.1e-81 304.7 363 51.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.3e-81 304.3 364 51.4
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 7.9e-80 301.2 370 50.8
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.0e-79 300.8 364 50.3
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-78 297.4 365 50.4
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-78 296.6 364 50.5
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.5e-78 296.2 368 48.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 3.3e-78 295.8 364 48.9
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.3e-77 293.9 364 48.9
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.3e-77 293.9 385 47.3
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 6.2e-77 291.6 310 54.2
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.4e-76 290.4 364 48.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 5.3e-76 288.5 364 48.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.9e-76 288.1 348 50.9
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 3.4e-75 285.8 307 54.1
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.4e-75 285.8 330 51.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 4.5e-75 285.4 364 49.2
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 7.6e-75 284.6 364 48.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.7e-74 283.5 364 48.1
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.7e-74 283.5 370 48.4
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.8e-74 282.3 364 48.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 4.9e-74 282.0 369 48.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 6.4e-74 281.6 364 48.9
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-73 280.4 364 48.1
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 3.2e-73 279.3 364 47.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.2e-73 279.3 364 47.3
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 5.5e-73 278.5 364 47.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 9.3e-73 277.7 365 47.7
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 9.3e-73 277.7 364 47.0
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 9.3e-73 277.7 363 47.1
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.2e-72 277.3 364 47.3
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-72 276.9 326 51.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.6e-72 276.9 364 47.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.1e-72 276.6 364 46.4
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 7.9e-72 274.6 365 46.8
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 7.9e-72 274.6 364 47.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.3e-71 273.9 365 46.3
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.3e-71 273.1 364 46.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.0e-71 272.7 364 46.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 5.1e-71 271.9 364 47.3
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 6.7e-71 271.6 364 45.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.5e-70 270.4 366 46.7
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.5e-70 270.4 360 47.5
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.5e-70 269.6 360 47.5
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 2.5e-70 269.6 364 45.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 4.3e-70 268.9 364 47.3
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 9.6e-70 267.7 365 46.6
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.3e-69 267.3 365 46.3
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.6e-69 266.9 366 46.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.7e-69 265.8 365 46.0
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.8e-69 265.4 366 45.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 8.2e-69 264.6 365 45.8
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.1e-68 264.2 375 46.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.4e-68 263.1 367 46.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 4.0e-68 262.3 346 47.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 5.3e-68 261.9 365 45.8
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 9.0e-68 261.2 364 45.9
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.5e-67 260.4 364 45.3
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.0e-67 260.0 372 45.4
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.6e-67 259.6 392 43.6
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 5.8e-67 258.5 391 43.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.8e-67 258.5 326 48.8
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 7.6e-67 258.1 366 45.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.3e-66 257.3 364 44.5
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.3e-66 257.3 356 45.2
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.9e-66 256.1 333 47.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.9e-66 255.4 357 46.8
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.2e-64 250.8 326 47.2
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.2e-61 240.0 309 48.9
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.4e-57 227.3 378 41.5
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.5e-54 216.5 363 41.9
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.3e-53 214.2 224 54.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 5.9e-51 205.3 368 40.8
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.0e-50 204.5 355 39.7
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.5e-50 201.4 354 40.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.5e-49 199.9 341 40.2
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.8e-47 193.7 223 52.0
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.3e-46 189.5 308 39.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.0e-43 180.3 358 36.9
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.4e-41 174.1 244 46.7
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-41 174.1 161 59.0
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 4.2e-41 172.6 207 50.2
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.6e-40 170.6 385 33.0
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 2.7e-40 169.9 163 58.3
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 2.0e-38 163.7 177 53.7
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.3e-37 161.0 132 62.9
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-36 157.9 216 44.4
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 2.4e-36 156.8 279 40.9
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.8e-34 149.4 144 59.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 3.6e-32 142.9 366 30.9
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.3e-31 140.2 149 52.3
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.2e-31 139.0 156 51.3
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.5e-30 137.5 169 49.1
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.2e-29 133.7 167 47.9
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 4.8e-29 132.5 356 29.2
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.4e-28 131.0 179 46.4
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-27 127.1 132 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 5.5e-25 119.0 414 28.7
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 9.4e-25 118.2 129 55.0
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-23 114.8 80 77.5
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.6e-22 110.2 80 75.0
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.7e-21 106.3 104 52.9
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.9e-19 99.0 145 41.4
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.0e-15 88.2 71 67.6
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.7e-13 80.9 80 61.2
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.2e-13 80.5 191 34.0
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.3e-10 71.2 85 51.8
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 8.6e-10 68.6 267 27.3


User provided reference genes

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