Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G174400 Prunus persica HOM05D003404 ORTHO05D004052 4.4e-98 361.3 185 100.0
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 1.9e-45 186.4 206 57.3
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 2.2e-44 183.0 200 57.0
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 6.3e-44 181.4 208 54.3
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 2.4e-43 179.5 206 54.9
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 4.1e-43 178.7 206 53.9
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 6.9e-43 177.9 216 52.3
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 6.9e-43 177.9 208 53.8
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 6.9e-43 177.9 206 54.9
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 6.9e-43 177.9 206 54.9
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 6.9e-43 177.9 198 56.6
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 1.5e-42 176.8 206 54.4
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 2.6e-42 176.0 206 53.9
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 2.6e-42 176.0 207 53.6
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 3.4e-42 175.6 206 53.9
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 3.4e-42 175.6 208 53.4
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 7.7e-42 174.5 206 53.4
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 1.7e-41 173.3 206 52.9
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.2e-41 172.9 208 52.4
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 3.8e-41 172.2 206 52.4
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 6.5e-41 171.4 206 52.9
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 6.5e-41 171.4 200 54.5
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 1.1e-40 170.6 207 51.7
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.4e-40 170.2 208 51.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 1.9e-40 169.9 213 51.6
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.5e-40 169.5 206 52.4
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.5e-40 169.5 206 52.4
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 3.2e-40 169.1 206 51.9
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 3.2e-40 169.1 206 51.9
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 4.2e-40 168.7 206 51.5
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.2e-40 168.7 206 51.0
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 5.5e-40 168.3 206 51.5
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 5.5e-40 168.3 198 52.0
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 5.5e-40 168.3 206 51.5
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 5.5e-40 168.3 206 51.0
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 9.4e-40 167.5 198 53.0
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 9.4e-40 167.5 207 51.7
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.2e-39 167.2 206 51.5
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 1.2e-39 167.2 206 51.9
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.2e-39 167.2 206 51.9
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.1e-39 166.4 206 50.5
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.1e-39 166.4 206 50.0
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 4.6e-39 165.2 207 49.8
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 4.6e-39 165.2 207 51.2
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 6.1e-39 164.9 198 52.0
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 6.1e-39 164.9 198 53.0
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 6.1e-39 164.9 198 52.0
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.0e-38 164.1 195 52.8
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 1.0e-38 164.1 206 51.5
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.0e-38 164.1 206 49.5
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 1.0e-38 164.1 206 51.0
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.0e-38 164.1 208 50.5
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 1.8e-38 163.3 198 50.0
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 1.8e-38 163.3 198 52.5
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 2.3e-38 162.9 198 50.0
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 3.0e-38 162.5 198 49.5
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 3.9e-38 162.2 218 49.1
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 3.9e-38 162.2 206 51.0
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 5.1e-38 161.8 206 51.5
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 5.1e-38 161.8 202 49.5
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 5.1e-38 161.8 206 49.0
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 5.1e-38 161.8 198 50.5
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 8.8e-38 161.0 198 50.5
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 1.1e-37 160.6 206 49.5
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 1.1e-37 160.6 207 48.3
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.5e-37 160.2 206 49.0
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 1.5e-37 160.2 202 50.0
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 1.5e-37 160.2 202 50.0
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.5e-37 160.2 207 49.3
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 1.5e-37 160.2 194 51.5
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 1.5e-37 160.2 202 50.0
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.5e-37 160.2 206 48.1
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 2.0e-37 159.8 194 51.0
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.0e-37 159.8 198 49.0
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 2.6e-37 159.5 196 51.0
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 3.3e-37 159.1 194 51.0
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 3.3e-37 159.1 205 50.2
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 3.3e-37 159.1 199 49.7
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 4.4e-37 158.7 214 49.5
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 5.7e-37 158.3 207 48.3
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 7.4e-37 157.9 214 49.1
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 1.3e-36 157.1 194 51.0
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 1.3e-36 157.1 194 51.0
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 1.3e-36 157.1 194 51.0
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 1.3e-36 157.1 206 47.1
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.3e-36 157.1 198 50.0
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.7e-36 156.8 207 47.8
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 2.2e-36 156.4 193 51.3
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 2.8e-36 156.0 212 49.1
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 2.8e-36 156.0 220 47.7
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 4.8e-36 155.2 198 48.0
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 1.1e-35 154.1 194 50.5
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 1.5e-34 150.2 222 45.5
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 1.5e-34 150.2 204 48.5
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 1.5e-34 150.2 204 48.5
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 2.2e-33 146.4 237 44.3
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.9e-33 146.0 207 47.3
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 5.0e-33 145.2 198 48.5
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 8.5e-33 144.4 207 46.9
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 4.2e-32 142.1 259 41.7
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 7.2e-32 141.4 202 44.6
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 9.4e-32 141.0 157 54.8
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 1.6e-31 140.2 177 52.5
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 3.6e-31 139.0 157 52.2
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 3.3e-29 132.5 195 46.7
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 3.3e-29 132.5 195 46.7
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 5.7e-29 131.7 199 42.2
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 7.4e-29 131.3 198 45.5
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 7.4e-29 131.3 206 46.1
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.3e-28 130.6 199 43.2
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 2.8e-28 129.4 207 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 9.1e-27 124.4 203 41.9
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 4.5e-26 122.1 135 57.8
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 2.9e-25 119.4 143 53.8
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 3.6e-23 112.5 227 38.8
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 6.3e-20 101.7 174 44.8
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 3.5e-18 95.9 148 43.9
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 2.2e-17 93.2 160 38.1
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 1.9e-16 90.1 171 40.4
Gohir.A11G223200 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.8e-12 75.5 101 51.5
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 6.5e-09 65.1 66 56.1
Actinidia01637 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.4e-06 57.4 36 75.0
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 6.8e-06 55.1 198 26.8
VMungo0112G0001 Vigna mungo HOM05D003404 ORTHO05D004052 6.8e-06 55.1 38 71.1
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 8.8e-06 54.7 68 42.6


User provided reference genes

Program Settings