Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 0.0e+00 1107.0 560 100.0
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 4.7e-252 874.4 570 81.6
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.4e-218 761.9 580 73.4
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 2.1e-215 752.7 564 71.8
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-207 726.9 580 69.7
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.1e-200 703.7 572 67.8
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.5e-197 693.3 567 66.8
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.4e-197 691.0 540 69.8
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.0e-193 680.6 572 65.6
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.6e-191 673.3 601 62.1
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.8e-187 659.8 569 63.6
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 6.5e-185 651.4 577 62.4
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 5.1e-182 641.7 590 61.4
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 8.7e-182 641.0 532 65.8
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.5e-181 640.2 575 61.9
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 4.1e-179 632.1 563 63.6
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.5e-178 630.2 631 57.4
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 5.9e-178 628.2 546 64.5
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 7.2e-176 621.3 672 56.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 2.7e-175 619.4 572 61.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.8e-174 616.7 569 61.7
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.6e-173 612.8 437 74.8
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.4e-173 612.1 575 59.8
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.2e-172 609.8 567 61.4
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 5.3e-171 605.1 595 57.3
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.2e-170 604.0 640 54.5
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 1.5e-170 603.6 572 60.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 7.9e-167 591.3 653 55.0
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 2.0e-165 586.6 566 60.4
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 7.0e-163 578.2 505 61.8
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.3e-161 573.9 568 60.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 2.5e-160 569.7 566 57.8
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.1e-159 566.6 577 57.2
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.1e-159 566.6 475 66.9
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 6.1e-159 565.1 589 58.7
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 8.8e-158 561.2 400 73.2
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.3e-156 557.4 584 56.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.1e-155 554.3 624 53.7
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.2e-154 550.8 574 57.1
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 5.9e-154 548.5 578 56.4
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.5e-152 543.9 678 50.3
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.9e-152 543.5 666 50.8
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.6e-151 540.4 637 52.7
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.8e-150 537.0 536 58.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 6.8e-150 535.0 561 56.1
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.1e-147 527.7 616 51.5
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 7.0e-147 525.0 627 49.9
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 3.5e-146 522.7 540 55.9
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 4.5e-146 522.3 581 53.4
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 5.9e-146 521.9 620 53.1
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 7.7e-146 521.5 340 75.3
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 7.7e-146 521.5 626 49.2
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 8.6e-145 518.1 394 69.0
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 3.3e-144 516.2 613 49.4
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 7.2e-144 515.0 628 50.6
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.6e-143 513.8 644 48.6
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 4.7e-143 512.3 617 50.6
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.3e-142 510.0 591 51.9
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 6.8e-142 508.4 576 52.3
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.5e-138 496.1 647 48.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.8e-137 492.7 538 52.4
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.3e-136 489.6 475 56.8
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.8e-135 486.5 538 55.4
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 4.7e-135 485.7 358 70.4
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 4.0e-134 482.6 612 47.4
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 8.9e-134 481.5 566 51.4
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 2.0e-133 480.3 569 49.6
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.4e-133 479.6 567 50.3
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.4e-133 479.6 570 50.5
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.4e-133 479.6 570 50.5
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.8e-133 478.8 527 52.8
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.9e-132 476.5 591 47.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 3.7e-132 476.1 570 50.2
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.9e-132 475.7 584 49.0
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 8.3e-132 474.9 479 57.4
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-131 474.6 624 48.4
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.4e-131 473.4 565 49.7
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 4.6e-130 469.2 436 59.4
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.3e-129 466.8 561 49.6
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 2.1e-127 460.3 588 48.6
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.8e-127 459.9 568 48.8
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.8e-126 457.2 575 50.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 4.0e-126 456.1 582 48.8
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-125 454.1 582 48.5
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-125 454.1 676 42.5
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 2.0e-125 453.8 600 45.8
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 8.3e-124 448.4 358 63.7
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 2.7e-122 443.4 678 42.9
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.0e-121 439.1 523 51.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.5e-120 437.6 272 77.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.1e-119 433.7 554 47.5
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 4.0e-118 429.5 404 56.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.0e-113 414.8 467 51.8
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-112 411.4 553 46.7
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.4e-110 403.7 299 73.2
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 5.2e-110 402.5 454 52.0
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 5.2e-110 402.5 454 52.0
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 8.9e-110 401.7 349 58.7
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.3e-108 397.9 562 44.7
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.2e-108 397.1 559 43.8
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 4.9e-108 396.0 489 47.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.9e-107 394.0 386 53.1
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.2e-107 393.3 640 43.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 6.6e-105 385.6 456 50.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 8.1e-103 378.6 456 49.1
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 4.9e-100 369.4 652 40.0
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.4e-94 351.3 364 51.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.4e-94 350.5 442 50.5
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 5.8e-93 345.9 359 52.4
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 3.1e-86 323.6 582 41.1
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 5.5e-83 312.8 346 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 8.4e-76 288.9 485 38.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 3.2e-75 287.0 444 45.0
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 5.5e-75 286.2 342 43.6
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.8e-71 273.9 339 42.2
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.7e-68 264.6 318 51.9
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.5e-67 260.8 254 56.3
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.3e-63 246.1 278 51.4
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.3e-55 221.9 282 44.3
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 2.2e-52 211.1 124 82.3
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 7.0e-46 189.5 390 33.3
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 2.9e-36 157.5 113 76.1
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.5e-35 155.2 292 37.0
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 6.3e-31 139.8 106 65.1
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.6e-28 129.4 185 42.7
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 4.4e-24 117.1 68 79.4
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 4.7e-18 97.1 330 30.6
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.4e-17 95.5 75 60.0
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 2.0e-16 91.7 179 37.4
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 2.4e-14 84.7 66 51.5
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.0e-13 81.6 62 59.7
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 3.1e-09 67.8 45 73.3
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.1e-09 67.8 53 60.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.2e-07 61.6 37 67.6


User provided reference genes

Program Settings