Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 6.9e-184 647.1 317 100.0
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 9.4e-157 557.0 319 85.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 5.4e-136 488.0 317 77.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.6e-132 475.3 319 75.9
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.0e-132 474.2 319 75.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-128 463.8 319 74.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-128 462.6 303 76.6
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.2e-124 450.3 315 71.1
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 4.7e-124 448.4 320 69.1
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.0e-115 418.7 319 66.8
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.4e-114 415.2 316 66.1
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 8.3e-113 411.0 319 64.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 7.1e-112 407.9 322 64.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.1e-111 406.4 318 63.8
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.0e-110 404.1 317 65.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.0e-110 402.5 321 63.2
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.9e-109 399.8 321 63.2
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 5.6e-109 398.3 315 61.0
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.6e-108 396.7 272 71.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 3.6e-108 395.6 328 61.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 8.1e-108 394.4 315 62.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 8.9e-107 391.0 315 63.2
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-106 390.6 325 61.5
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.0e-106 389.8 325 61.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.0e-106 389.8 317 61.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.6e-106 389.4 318 59.7
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.4e-106 389.0 320 63.4
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.9e-105 386.0 318 59.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 8.4e-105 384.4 318 60.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.4e-104 383.6 308 59.4
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.4e-104 382.9 315 61.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 9.2e-104 380.9 316 60.4
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.2e-104 380.9 296 62.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.2e-103 380.6 323 60.4
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.6e-103 380.2 320 59.4
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.7e-103 379.4 316 61.4
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 4.6e-103 378.6 318 61.0
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.6e-103 378.6 326 59.8
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.0e-103 378.3 327 61.5
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.0e-102 377.5 284 64.8
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.9e-102 375.6 365 54.2
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 3.9e-102 375.6 287 63.4
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 8.6e-102 374.4 320 59.4
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.1e-101 374.0 292 63.4
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.1e-101 374.0 378 54.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 3.3e-101 372.5 330 57.9
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 3.3e-101 372.5 318 60.7
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 5.6e-101 371.7 311 60.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 7.3e-101 371.3 319 58.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.1e-100 369.8 313 59.7
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 6.2e-100 368.2 319 59.2
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 8.1e-100 367.9 317 60.9
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.1e-99 367.5 319 58.9
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.1e-99 367.5 288 61.8
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.4e-99 366.3 292 60.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 3.1e-99 365.9 314 60.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 4.0e-99 365.5 321 59.2
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.0e-99 365.5 262 65.6
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.9e-99 364.4 320 59.4
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.5e-98 363.6 317 59.3
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.0e-98 363.2 320 59.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 4.4e-98 362.1 299 60.2
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 9.9e-98 360.9 264 65.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.3e-97 360.5 310 59.0
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.3e-97 360.5 320 58.4
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-97 359.4 292 61.0
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-97 359.4 292 61.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 6.4e-97 358.2 317 58.7
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 8.4e-97 357.8 318 57.2
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.1e-96 357.5 324 58.3
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.1e-96 357.5 324 58.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.2e-96 355.9 324 58.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 9.3e-96 354.4 261 65.9
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.2e-95 354.0 324 57.7
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.2e-95 354.0 332 53.3
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.6e-95 353.6 338 53.8
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 2.1e-95 353.2 323 58.8
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 2.1e-95 353.2 323 58.8
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.5e-95 352.4 319 56.1
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 6.0e-95 351.7 377 50.7
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 7.8e-95 351.3 315 55.9
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 2.3e-94 349.7 314 58.3
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 2.3e-94 349.7 261 65.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 3.9e-94 349.0 237 70.9
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.9e-93 346.7 323 57.0
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 5.6e-93 345.1 304 59.5
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 7.3e-93 344.7 317 55.8
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 9.6e-93 344.4 321 56.4
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.1e-92 343.2 321 56.4
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.8e-92 342.0 321 57.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 6.2e-92 341.7 313 54.6
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.4e-91 340.5 327 55.4
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.8e-91 340.1 362 51.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.8e-91 340.1 310 56.8
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 6.9e-91 338.2 262 63.7
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 9.0e-91 337.8 321 55.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.2e-90 337.4 318 56.6
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-90 337.0 358 50.8
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-90 337.0 262 64.1
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.5e-90 335.5 313 54.6
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.2e-89 333.2 285 61.1
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 8.4e-89 331.3 211 75.4
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.3e-88 327.8 211 77.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 4.6e-87 325.5 311 54.3
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 7.4e-85 318.2 236 66.1
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 9.3e-80 301.2 322 52.2
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.6e-79 300.4 211 68.7
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-78 297.7 323 51.7
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.4e-75 286.6 219 65.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.4e-74 282.7 319 50.5
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 7.2e-64 248.4 265 50.2
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 5.3e-59 232.3 273 48.7
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 6.9e-59 231.9 265 46.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.0e-58 230.3 272 48.5
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.0e-57 225.7 219 50.2
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 8.5e-57 224.9 240 52.5
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 8.5e-57 224.9 162 70.4
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.8e-54 217.2 240 51.2
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 3.9e-54 216.1 364 36.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.9e-51 205.3 216 54.6
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.7e-49 200.7 209 52.6
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.4e-48 197.6 230 44.8
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.0e-46 191.4 318 38.7
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.3e-46 190.3 192 51.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 5.9e-42 175.6 250 46.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.5e-40 170.2 230 37.4
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 5.5e-40 169.1 437 33.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 3.6e-39 166.4 111 67.6
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.0e-38 163.3 201 42.3
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 4.0e-38 162.9 317 36.3
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-37 160.6 191 47.6
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 4.8e-36 156.0 205 43.9
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.2e-34 151.4 121 57.9
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.1e-31 139.0 110 61.8
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 6.5e-25 119.0 276 30.8
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.0e-22 109.8 111 57.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.4e-19 101.3 196 31.6
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 2.4e-11 73.9 196 25.5
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.3e-09 68.2 43 65.1
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 3.6e-07 60.1 153 24.8
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.1e-06 57.0 73 37.0


User provided reference genes

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