Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 4.1e-133 478.0 236 100.0
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.5e-82 310.1 341 54.5
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 9.1e-72 274.2 375 42.7
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 9.1e-72 274.2 375 42.7
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.2e-71 273.9 373 42.9
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.0e-71 273.1 368 45.4
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 2.6e-71 272.7 375 42.9
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.5e-71 271.9 374 44.9
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.7e-71 271.2 375 42.4
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 8.5e-70 267.7 374 43.3
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 8.5e-70 267.7 374 43.3
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.5e-69 266.2 375 43.5
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 2.5e-69 266.2 375 43.2
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 5.5e-69 265.0 382 42.1
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.2e-68 263.8 374 43.3
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.1e-68 263.1 373 41.8
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.0e-67 260.8 374 42.2
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.0e-67 260.8 372 42.5
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.4e-67 260.4 373 42.1
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.4e-67 260.4 376 42.0
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.3e-67 259.6 374 43.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.3e-67 259.6 376 42.8
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 5.1e-67 258.5 373 41.6
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 6.7e-67 258.1 378 41.0
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 8.8e-67 257.7 375 42.4
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.1e-66 257.3 373 42.1
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 1.1e-66 257.3 373 41.8
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.5e-66 256.9 374 42.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.6e-66 256.1 375 42.7
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 5.7e-66 255.0 375 41.6
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 5.7e-66 255.0 375 41.3
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 7.4e-66 254.6 374 41.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.7e-65 252.3 373 40.8
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.1e-64 250.8 374 40.1
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.1e-64 250.8 373 40.2
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.8e-64 250.0 375 41.1
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.4e-64 249.6 353 42.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 3.1e-64 249.2 375 40.5
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 4.1e-64 248.8 374 40.9
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.2e-63 247.3 373 41.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 5.9e-63 245.0 374 40.6
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.7e-62 243.4 374 40.6
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 6.5e-62 241.5 375 39.2
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 6.5e-62 241.5 379 39.8
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 8.5e-62 241.1 375 38.7
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.1e-61 240.7 374 39.6
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.5e-61 240.4 353 39.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.5e-61 240.4 374 39.6
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 1.9e-61 240.0 376 39.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.9e-61 240.0 375 38.7
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.9e-61 240.0 374 39.3
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 1.9e-61 240.0 373 38.6
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 3.2e-61 239.2 375 38.7
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 3.2e-61 239.2 375 39.7
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.2e-61 239.2 372 41.7
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 4.2e-61 238.8 374 40.4
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 4.2e-61 238.8 375 39.5
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 4.2e-61 238.8 373 39.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 5.5e-61 238.4 379 38.5
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 7.2e-61 238.0 375 38.7
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 2.1e-60 236.5 374 40.1
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.7e-60 236.1 373 38.3
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.7e-60 235.3 375 40.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.7e-60 235.3 374 39.3
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 6.1e-60 235.0 375 39.5
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.0e-59 234.2 374 39.3
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.0e-59 234.2 374 39.3
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-59 233.8 379 38.8
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.4e-59 233.8 374 39.3
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.0e-59 232.6 373 39.9
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.0e-59 232.6 379 38.8
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 4.0e-59 232.3 376 39.4
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 4.0e-59 232.3 376 39.4
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.0e-59 232.3 374 40.4
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.3e-58 229.2 351 40.7
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 4.4e-58 228.8 373 38.3
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-57 226.9 373 39.4
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.7e-57 225.7 388 37.9
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 3.7e-57 225.7 360 38.3
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 3.7e-57 225.7 394 38.8
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.8e-56 223.4 374 37.2
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 3.1e-56 222.6 370 38.1
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.6e-55 220.3 371 38.3
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.0e-55 219.9 347 39.8
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 2.6e-55 219.5 370 37.6
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 3.5e-55 219.2 373 37.0
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 3.5e-55 219.2 373 35.7
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 4.5e-55 218.8 352 39.2
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 7.7e-55 218.0 373 37.3
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.7e-54 216.9 373 37.0
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.9e-54 216.1 373 36.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.9e-54 216.1 373 36.7
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 5.0e-54 215.3 373 36.7
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.5e-54 214.9 373 36.5
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 1.1e-53 214.2 328 41.5
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.1e-53 214.2 373 36.5
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.1e-53 214.2 373 36.2
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.5e-53 213.8 372 37.1
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.5e-53 213.8 370 37.3
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.9e-53 213.4 368 37.5
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.9e-53 213.4 390 37.7
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 7.2e-53 211.5 372 37.1
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.1e-52 209.9 373 35.9
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 2.1e-52 209.9 404 35.4
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 6.1e-52 208.4 377 36.1
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 8.0e-52 208.0 373 35.7
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 8.8e-51 204.5 442 34.4
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 1.5e-50 203.8 373 34.6
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.0e-50 203.4 373 36.2
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 5.7e-50 201.8 405 33.3
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.4e-48 196.4 354 36.4
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.1e-48 196.1 152 69.1
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 6.5e-46 188.3 371 34.2
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.1e-45 187.6 152 63.8
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.6e-44 183.7 153 60.1
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.1e-44 183.3 373 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 2.7e-44 183.0 401 31.9
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 5.2e-43 178.7 326 37.7
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.5e-42 177.2 376 33.2
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 3.4e-42 176.0 141 63.1
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.4e-42 175.6 369 33.1
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.8e-41 172.9 375 32.0
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.7e-41 172.6 140 62.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.5e-37 160.6 359 32.0
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.2e-36 157.5 152 59.2
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.8e-36 156.4 123 65.9
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 5.2e-35 152.1 369 29.5
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.6e-31 139.0 141 53.9
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.9e-31 138.7 141 53.9
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.9e-31 138.7 152 52.6
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.9e-30 136.0 300 32.0
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-30 134.8 141 53.2
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.9e-29 133.7 123 59.3
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.8e-28 129.8 152 48.7
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-27 127.9 87 73.6
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.1e-27 126.3 87 72.4
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.9e-27 124.8 86 72.1
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.5e-26 124.0 196 39.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 6.4e-25 118.6 91 60.4
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 2.4e-24 116.7 155 44.5
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 2.7e-23 113.2 91 59.3
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 1.5e-21 107.5 91 57.1
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 9.5e-21 104.8 86 58.1
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.4e-19 100.9 95 47.4
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 4.0e-19 99.4 89 51.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.8e-18 94.7 94 56.4
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.7e-17 94.0 78 60.3
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.4e-17 92.0 111 49.5
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.1e-16 91.3 80 52.5
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.1e-16 91.3 78 57.7
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.1e-16 88.6 94 54.3
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 1.2e-15 87.8 58 70.7
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 2.7e-15 86.7 159 35.2
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 1.3e-14 84.3 145 37.2
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-14 84.0 101 51.5
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 3.3e-13 79.7 137 38.0
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.2e-12 77.8 91 47.3
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.8e-12 76.6 70 54.3
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 1.1e-11 74.7 65 56.9
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.1e-11 74.7 144 31.9
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.1e-11 73.2 59 57.6
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-09 67.8 64 51.6
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 2.2e-09 67.0 64 54.7
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.9e-09 65.9 165 35.2
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 6.4e-09 65.5 40 80.0
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.4e-08 64.3 80 50.0
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.4e-08 62.4 127 37.8
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 9.2e-08 61.6 50 58.0
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 9.2e-08 61.6 63 44.4
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-07 61.2 51 64.7


User provided reference genes

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