Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G197800 Prunus persica HOM05D003878 ORTHO05D003857 1.1e-83 313.2 153 100.0
MD14G1204500 Malus domestica HOM05D003878 ORTHO05D003857 8.9e-36 154.1 93 75.3
RcHm_v2.0_Chr7g0181991 Rosa chinensis HOM05D003878 ORTHO05D003857 5.2e-28 128.3 187 42.2
FvH4_5g14580 Fragaria vesca HOM05D003878 ORTHO05D003857 1.2e-27 127.1 191 42.9
FAN18G2514 Fragaria x ananassa HOM05D003878 ORTHO05D003857 2.6e-27 125.9 191 42.9
Phvul.003G188400 Phaseolus vulgaris HOM05D003878 ORTHO05D003857 3.6e-21 105.5 140 42.9
FAN13G3320 Fragaria x ananassa HOM05D001764 ORTHO05D003857 6.0e-16 88.2 206 34.5
Psat4g049800 Pisum sativum HOM05D003878 ORTHO05D003857 1.1e-14 84.0 207 30.4
CSS0032055 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 1.9e-14 83.2 209 30.1
Ca_21808_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 1.9e-14 83.2 211 29.4
TWI60G1095 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 1.9e-14 83.2 180 32.8
GSVIVG01007965001 Vitis vinifera HOM05D003878 ORTHO05D003857 1.9e-14 83.2 194 28.9
Dinv10655 Davidia involucrata HOM05D003878 ORTHO05D003857 2.5e-14 82.8 192 32.8
TPR.G681 Trifolium pratense HOM05D003878 ORTHO05D003857 3.3e-14 82.4 206 30.6
Ah.02g113730 Amaranthus hybridus HOM05D003878 ORTHO05D003857 4.3e-14 82.0 195 29.2
VMungo1309G1477 Vigna mungo HOM05D003878 ORTHO05D003857 5.6e-14 81.6 211 30.8
Medtr4g108880 Medicago truncatula HOM05D003878 ORTHO05D003857 7.3e-14 81.3 211 29.4
SalBow7G4352 Salvia bowleyana HOM05D003878 ORTHO05D003857 7.3e-14 81.3 179 33.0
VMungo1215G0660 Vigna mungo HOM05D003878 ORTHO05D003857 7.3e-14 81.3 210 29.5
Glyma.17G102200 Glycine max HOM05D003878 ORTHO05D003857 9.5e-14 80.9 194 31.4
PGSC0003DMG400033048 Solanum tuberosum HOM05D003878 ORTHO05D003857 1.2e-13 80.5 211 31.8
Sopen06g026990 Solanum pennellii HOM05D003878 ORTHO05D003857 1.6e-13 80.1 208 30.8
Cc04_g14990 Coffea canephora HOM05D003878 ORTHO05D003857 2.1e-13 79.7 194 32.0
Manes.14G081500 Manihot esculenta HOM05D003878 ORTHO05D003857 2.1e-13 79.7 190 32.1
PSO478G1572 Papaver somniferum HOM05D003878 ORTHO05D003857 2.1e-13 79.7 181 30.4
Solyc06g069690.4 Solanum lycopersicum HOM05D003878 ORTHO05D003857 2.1e-13 79.7 208 30.8
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 2.1e-13 79.7 203 31.5
Actinidia19020 Actinidia chinensis HOM05D003878 ORTHO05D003857 3.6e-13 79.0 193 30.6
AUR62008459 Chenopodium quinoa HOM05D003878 ORTHO05D003857 3.6e-13 79.0 89 43.8
Nn5g26927 Nelumbo nucifera HOM05D003878 ORTHO05D003857 3.6e-13 79.0 200 31.0
TWI15G0625 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 3.6e-13 79.0 168 32.1
Gohir.D03G094200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 4.7e-13 78.6 184 32.1
arahy.Tifrunner.gnm1.ann1.2F1UPX Arachis hypogaea HOM05D003878 ORTHO05D003857 6.2e-13 78.2 196 31.1
arahy.Tifrunner.gnm1.ann1.D90B1M Arachis hypogaea HOM05D003878 ORTHO05D003857 6.2e-13 78.2 196 31.1
DCAR_016576 Daucus carota HOM05D003878 ORTHO05D003857 6.2e-13 78.2 211 29.9
Glyma.04G166300 Glycine max HOM05D003878 ORTHO05D003857 6.2e-13 78.2 209 29.7
Gorai.003G098300 Gossypium raimondii HOM05D003878 ORTHO05D003857 6.2e-13 78.2 187 32.1
Dinv38743 Davidia involucrata HOM05D003878 ORTHO05D003857 8.1e-13 77.8 158 32.9
Gohir.A03G067700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 8.1e-13 77.8 187 31.6
TPR.G11840 Trifolium pratense HOM05D003878 ORTHO05D003857 8.1e-13 77.8 188 30.9
Lj4g0002884 Lotus japonicus HOM05D003878 ORTHO05D003857 1.1e-12 77.4 212 29.7
Phvul.009G185500 Phaseolus vulgaris HOM05D003878 ORTHO05D003857 1.1e-12 77.4 211 29.4
MSTRG.4440 Avicennia marina HOM05D003878 ORTHO05D003857 1.4e-12 77.0 174 32.8
PSO017G0340 Papaver somniferum HOM05D003878 ORTHO05D003857 1.4e-12 77.0 181 29.8
QL10p017674 Quercus lobata HOM05D003878 ORTHO05D003857 1.4e-12 77.0 186 31.7
unitig_60.g25802 Utricularia gibba HOM05D003878 ORTHO05D003857 1.4e-12 77.0 158 35.4
Actinidia35011 Actinidia chinensis HOM05D003878 ORTHO05D003857 1.8e-12 76.6 201 28.4
Hund09823 Selenicereus undatus HOM05D003878 ORTHO05D003857 1.8e-12 76.6 178 30.3
Psat5g199360 Pisum sativum HOM05D003878 ORTHO05D003857 2.3e-12 76.3 179 30.7
CiPaw.11G047100 Carya illinoinensis HOM05D003878 ORTHO05D003857 3.1e-12 75.9 182 31.3
Migut.I00209 Erythranthe guttata HOM05D003878 ORTHO05D003857 3.1e-12 75.9 183 30.1
Solyc03g115770.3 Solanum lycopersicum HOM05D003878 ORTHO05D003857 3.1e-12 75.9 198 30.8
Sopen03g034750 Solanum pennellii HOM05D003878 ORTHO05D003857 3.1e-12 75.9 198 30.8
unitig_0.g775 Utricularia gibba HOM05D003878 ORTHO05D003857 3.1e-12 75.9 176 30.7
vmacro16524 Vaccinium macrocarpon HOM05D003878 ORTHO05D003857 3.1e-12 75.9 189 28.6
PGSC0003DMG400019518 Solanum tuberosum HOM05D003878 ORTHO05D003857 4.0e-12 75.5 195 29.7
Ca_14691_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 5.2e-12 75.1 186 30.6
Ca_30947_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 5.2e-12 75.1 186 30.6
Glyma.06G196200 Glycine max HOM05D003878 ORTHO05D003857 5.2e-12 75.1 211 29.4
Hma1.2p1_0322F.1_g125070 Hydrangea macrophylla HOM05D003878 ORTHO05D003857 5.2e-12 75.1 179 29.6
Os02g0618200 Oryza sativa ssp. japonica HOM05D003878 ORTHO05D003857 5.2e-12 75.1 189 27.5
Atru.chr9.336 Acer truncatum HOM05D003878 ORTHO05D003857 6.8e-12 74.7 194 29.4
Actinidia37611 Actinidia chinensis HOM05D003878 ORTHO05D003857 6.8e-12 74.7 148 32.4
ATR0680G414 Amborella trichopoda HOM05D003878 ORTHO05D003857 6.8e-12 74.7 193 26.9
Oeu047002.2 Olea europaea HOM05D003878 ORTHO05D003857 6.8e-12 74.7 140 33.6
COL.COLO4_36941 Corchorus olitorius HOM05D003878 ORTHO05D003857 8.9e-12 74.3 184 31.5
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 8.9e-12 74.3 181 31.5
Manes.06G089800 Manihot esculenta HOM05D003878 ORTHO05D003857 8.9e-12 74.3 186 31.7
Sabra15G0086900 Salix brachista HOM05D003878 ORTHO05D003857 8.9e-12 74.3 191 30.4
CsaV3_1G005680 Cucumis sativus L. HOM05D003878 ORTHO05D003857 1.2e-11 73.9 185 31.9
Thecc.03G093700 Theobroma cacao HOM05D003878 ORTHO05D003857 1.2e-11 73.9 184 31.5
TAR623G0526 Trochodendron aralioides HOM05D003878 ORTHO05D003857 1.2e-11 73.9 196 30.6
Lsat_1_v5_gn_1_14320 Lactuca sativa HOM05D003878 ORTHO05D003857 1.5e-11 73.6 181 29.3
Lj9C466G6 Lonicera japonica HOM05D003878 ORTHO05D003857 1.5e-11 73.6 204 31.9
QL10p017642 Quercus lobata HOM05D003878 ORTHO05D003857 1.5e-11 73.6 158 30.4
Aqoxy3G03485 Aquilegia oxysepala HOM05D003878 ORTHO05D003857 2.0e-11 73.2 183 30.6
Lj5A108G51 Lonicera japonica HOM05D003878 ORTHO05D003857 2.0e-11 73.2 227 29.1
Nn2g10380 Nelumbo nucifera HOM05D003878 ORTHO05D003857 2.0e-11 73.2 181 31.5
ClCG04G012090 Citrullus lanatus HOM05D003878 ORTHO05D003857 2.6e-11 72.8 185 31.4
MELO3C001999.2 Cucumis melo HOM05D003878 ORTHO05D003857 2.6e-11 72.8 185 31.4
Duzib068G0503 Durio zibethinus HOM05D003878 ORTHO05D003857 2.6e-11 72.8 196 29.1
THA.LOC104801462 Tarenaya hassleriana HOM05D003878 ORTHO05D003857 2.6e-11 72.8 177 31.6
Zm00001eb247330 Zea mays HOM05D003878 ORTHO05D003857 2.6e-11 72.8 185 28.6
Cfa018911 Carpinus fangiana HOM05D003878 ORTHO05D003857 4.4e-11 72.0 191 30.9
AUR62021636 Chenopodium quinoa HOM05D003878 ORTHO05D003857 4.4e-11 72.0 163 29.4
Thhalv10003924m.g Eutrema salsugineum HOM05D003878 ORTHO05D003857 4.4e-11 72.0 168 30.4
Medtr3g037390 Medicago truncatula HOM05D003878 ORTHO05D003857 4.4e-11 72.0 189 29.6
Sed0015977 Sechium edule HOM05D003878 ORTHO05D003857 4.4e-11 72.0 171 31.6
TAR629G1644 Trochodendron aralioides HOM05D003878 ORTHO05D003857 4.4e-11 72.0 176 30.1
CARHR275140 Cardamine hirsuta HOM05D003878 ORTHO05D003857 5.8e-11 71.6 129 34.9
Lalb_Chr08g0235491 Lupinus albus HOM05D003878 ORTHO05D003857 5.8e-11 71.6 182 30.2
TAR369G0188 Trochodendron aralioides HOM05D003878 ORTHO05D003857 5.8e-11 71.6 182 30.8
TAR625G0726 Trochodendron aralioides HOM05D003878 ORTHO05D003857 5.8e-11 71.6 182 30.8
MD14G1204700 Malus domestica HOM05D003878 ORTHO05D003857 7.6e-11 71.2 168 32.1
Aa31LG11G2040 Aethionema arabicum HOM05D003878 ORTHO05D003857 9.9e-11 70.9 129 34.1
MBI05_g41786_MAGBIO Magnolia biondii HOM05D003878 ORTHO05D003857 9.9e-11 70.9 198 30.3
Potri.015G061900 Populus trichocarpa HOM05D003878 ORTHO05D003857 9.9e-11 70.9 194 30.4
Migut.D01764 Erythranthe guttata HOM05D003878 ORTHO05D003857 1.3e-10 70.5 168 29.8
AL8G38050 Arabidopsis lyrata HOM05D003878 ORTHO05D003857 1.7e-10 70.1 129 34.1
Carub.0008s2205 Capsella rubella HOM05D003878 ORTHO05D003857 1.7e-10 70.1 129 34.1
Duzib205G1832 Durio zibethinus HOM05D003878 ORTHO05D003857 1.7e-10 70.1 144 30.6
ECA247G3052 Erigeron canadensis HOM05D003878 ORTHO05D003857 1.7e-10 70.1 187 28.9
Sp2g24590 Schrenkiella parvula HOM05D003878 ORTHO05D003857 1.7e-10 70.1 167 32.3
HPP92_009069 Vanilla planifolia HOM05D003878 ORTHO05D003857 1.7e-10 70.1 199 27.1
FAN13G2746 Fragaria x ananassa HOM05D003878 ORTHO05D003857 2.2e-10 69.7 209 28.7
FAN18G1413 Fragaria x ananassa HOM05D003878 ORTHO05D003857 2.2e-10 69.7 200 29.5
AT5G61380 Arabidopsis thaliana HOM05D003878 ORTHO05D003857 2.9e-10 69.3 129 34.1
BcaC04g23454 Brassica carinata HOM05D003878 ORTHO05D003857 2.9e-10 69.3 129 33.3
C09p08170 Brassica napus HOM05D003878 ORTHO05D003857 2.9e-10 69.3 129 33.3
BolC9t53729H Brassica oleracea HOM05D003878 ORTHO05D003857 2.9e-10 69.3 129 33.3
Ciclev10019534m.g Citrus clementina HOM05D003878 ORTHO05D003857 2.9e-10 69.3 181 29.8
MD06G1197300 Malus domestica HOM05D003878 ORTHO05D003857 2.9e-10 69.3 168 31.0
Ah.11g048230 Amaranthus hybridus HOM05D003878 ORTHO05D003857 3.8e-10 68.9 222 24.8
BcaB04g19909 Brassica carinata HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 33.3
A03p46980 Brassica napus HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 34.1
C07p45020 Brassica napus HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 34.1
BolC7t45025H Brassica oleracea HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 34.1
BraA03t13822Z Brassica rapa HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 34.1
BraA09t36379Z Brassica rapa HOM05D003878 ORTHO05D003857 3.8e-10 68.9 129 33.3
FAN08G1337 Fragaria x ananassa HOM05D003878 ORTHO05D003857 3.8e-10 68.9 200 29.5
Peaxi162Scf00274g00351 Petunia axillaris HOM05D003878 ORTHO05D003857 3.8e-10 68.9 55 60.0
PGR062G0001 Punica granatum HOM05D003878 ORTHO05D003857 3.8e-10 68.9 168 31.5
PGR083G0168 Punica granatum HOM05D003878 ORTHO05D003857 3.8e-10 68.9 168 31.5
FvH4_5g14560 Fragaria vesca HOM05D003878 ORTHO05D003857 4.9e-10 68.6 200 29.5
HanXRQChr02g0043181 Helianthus annuus HOM05D003878 ORTHO05D003857 4.9e-10 68.6 200 28.5
HanXRQChr08g0236661 Helianthus annuus HOM05D003878 ORTHO05D003857 4.9e-10 68.6 191 28.8
PSO198G0128 Papaver somniferum HOM05D003878 ORTHO05D003857 4.9e-10 68.6 168 30.4
GSVIVG01007970001 Vitis vinifera HOM05D003878 ORTHO05D003857 6.4e-10 68.2 158 30.4
CANSAT80G1069 Cannabis sativa HOM05D003878 ORTHO05D003857 8.4e-10 67.8 194 29.4
PSO063G5546 Papaver somniferum HOM05D003878 ORTHO05D003857 8.4e-10 67.8 168 27.4
Prupe.5G198000 Prunus persica HOM05D003878 ORTHO05D003857 8.4e-10 67.8 172 30.2
SMO358G0608 Selaginella moellendorffii HOM05D003878 ORTHO05D003857 8.4e-10 67.8 131 31.3
CAN.G587.10 Capsicum annuum HOM05D000541 ORTHO05D000137 1.1e-09 67.4 166 30.1
Duzib084G0302 Durio zibethinus HOM05D001073 ORTHO05D002392 1.1e-09 67.4 99 34.3
Prupe.5G197900 Prunus persica HOM05D003878 ORTHO05D003857 1.1e-09 67.4 143 30.8
Nitab4.5_0001211g0280 Nicotiana tabacum HOM05D003878 ORTHO05D003857 3.2e-09 65.9 207 27.1
RcHm_v2.0_Chr7g0182001 Rosa chinensis HOM05D003878 ORTHO05D003857 4.1e-09 65.5 201 29.4
CDE09G1270 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 1.2e-08 63.9 173 28.3
Sed0008795 Sechium edule HOM05D003878 ORTHO05D003857 1.2e-08 63.9 210 25.2
Gohir.D12G247100 Gossypium hirsutum HOM05D001073 ORTHO05D002392 4.6e-08 62.0 94 35.1
Dinv10653 Davidia involucrata HOM05D003878 ORTHO05D003857 7.8e-08 61.2 61 55.7
Lsat_1_v5_gn_5_21481 Lactuca sativa HOM05D003878 ORTHO05D003857 1.0e-07 60.8 210 26.2
Nitab4.5_0005900g0090 Nicotiana tabacum HOM05D003878 ORTHO05D003857 1.3e-07 60.5 85 40.0
DCAR_021519 Daucus carota HOM05D003878 ORTHO05D003857 2.3e-07 59.7 86 36.0
SEGI_11051 Sequoiadendron giganteum HOM05D003878 ORTHO05D003857 3.0e-07 59.3 91 38.5
EL10Ac5g11059 Beta vulgaris HOM05D003878 ORTHO05D003857 3.9e-07 58.9 101 31.7
Sc12g0006500 Simmondsia chinensis HOM05D003878 ORTHO05D003857 3.9e-07 58.9 86 38.4
CSS0027901 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 5.1e-07 58.5 99 36.4
CiPaw.01G082700 Carya illinoinensis HOM05D001073 ORTHO05D002392 5.1e-07 58.5 96 34.4
Zm00001eb184870 Zea mays HOM05D020494 ORTHO05D003857 5.1e-07 58.5 82 35.4
Zm00001eb096220 Zea mays HOM05D003878 ORTHO05D003857 6.6e-07 58.2 81 35.8
Zm00001eb150240 Zea mays HOM05D020494 ORTHO05D003857 6.6e-07 58.2 81 35.8
Sc13g0010470 Simmondsia chinensis HOM05D001073 ORTHO05D002392 1.5e-06 57.0 68 38.2
Glyma.05G025000 Glycine max HOM05D003878 ORTHO05D003857 1.9e-06 56.6 83 37.3
BraA02t09000Z Brassica rapa HOM05D001073 ORTHO05D002392 2.5e-06 56.2 89 32.6
Mapoly0085s0081 Marchantia polymorpha HOM05D003878 ORTHO05D003857 2.5e-06 56.2 133 28.6
Psat5g071920 Pisum sativum HOM05D001073 ORTHO05D002392 2.5e-06 56.2 71 38.0
A02p40320 Brassica napus HOM05D001073 ORTHO05D002392 3.3e-06 55.8 89 32.6
Eucgr.B00537 Eucalyptus grandis HOM05D003878 ORTHO05D003857 3.3e-06 55.8 83 37.3
arahy.Tifrunner.gnm1.ann1.N8Q6VK Arachis hypogaea HOM05D000196 ORTHO05D000279 5.6e-06 55.1 70 38.6
QL09p007185 Quercus lobata HOM05D001073 ORTHO05D002392 5.6e-06 55.1 68 36.8
BcaC06g33245 Brassica carinata HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 50.0
CDE07G1945 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 7.3e-06 54.7 92 35.9
Gohir.D07G083200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 47.7
Gohir.D13G087700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 47.7
Gorai.001G126800 Gossypium raimondii HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 47.7
Gorai.005G145700 Gossypium raimondii HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 47.7
MBI05_g22506_MAGBIO Magnolia biondii HOM05D003878 ORTHO05D003857 7.3e-06 54.7 44 47.7
arahy.Tifrunner.gnm1.ann1.8WUN2S Arachis hypogaea HOM05D000196 ORTHO05D000279 9.6e-06 54.3 70 41.4
EL10Ac3g05174 Beta vulgaris HOM05D001073 ORTHO05D002392 9.6e-06 54.3 95 32.6
Glyma.06G136600 Glycine max HOM05D001073 ORTHO05D002392 9.6e-06 54.3 68 35.3
VMungo1309G2840 Vigna mungo HOM05D001073 ORTHO05D002392 9.6e-06 54.3 68 35.3


User provided reference genes

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