Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1155.2 567 100.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1125.2 567 97.5
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1114.4 568 95.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1114.0 568 95.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1112.1 566 95.8
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1111.3 565 96.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1110.9 566 95.6
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1110.9 566 95.6
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1108.6 566 95.2
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1108.2 567 95.2
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1102.8 560 95.7
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1102.4 565 95.4
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1102.0 564 95.6
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1098.2 565 95.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 565 94.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1096.3 561 95.2
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1095.5 565 94.2
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 555 95.9
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 565 94.2
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 567 94.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1093.6 562 94.8
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 565 94.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1091.6 567 94.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1091.3 567 93.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1090.5 560 94.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 567 94.0
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 562 94.0
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 556 94.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 555 94.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 567 93.1
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 567 93.7
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 558 94.4
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 567 93.3
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 559 93.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 560 93.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 561 93.6
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 586 90.8
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 565 93.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 565 93.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 559 93.9
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 567 92.8
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 559 94.3
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 567 91.5
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 567 91.9
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 559 93.7
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 567 92.2
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 599 89.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 567 92.4
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 567 91.4
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 559 93.0
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 561 93.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 561 94.1
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 567 91.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 567 91.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 601 88.9
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 7.8e-312 1073.2 561 92.9
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 565 91.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 567 91.4
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 567 91.2
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 567 92.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 561 92.5
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 567 92.2
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 567 92.2
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 567 92.1
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 7.8e-311 1069.7 567 91.0
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 7.8e-311 1069.7 567 91.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 567 91.9
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 556 92.8
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 567 91.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 561 92.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 567 91.4
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 562 92.7
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 566 91.5
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 5.5e-309 1063.5 555 92.6
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 567 91.5
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 9.4e-309 1062.8 567 91.9
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 567 90.5
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 567 90.5
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 554 90.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.6e-306 1054.7 553 91.7
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 4.4e-306 1053.9 554 92.6
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 614 85.2
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.8e-305 1050.4 567 89.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.7e-302 1042.0 555 91.5
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 3.8e-302 1040.8 597 86.8
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 7.2e-301 1036.6 556 88.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 6.1e-300 1033.5 567 89.2
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.0e-299 1032.7 576 89.1
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.2e-299 1030.4 561 88.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-298 1029.2 523 94.8
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.7e-295 1018.1 565 89.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 8.6e-294 1013.1 553 87.2
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 8.6e-294 1013.1 553 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 542 88.2
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 7.8e-287 989.9 523 91.4
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 3.6e-276 954.5 489 93.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.0e-274 948.7 494 93.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 3.1e-267 924.9 567 81.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.3e-265 919.5 456 96.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.5e-263 911.4 540 80.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 6.2e-252 874.0 544 78.3
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.1e-236 822.4 558 75.3
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 4.5e-234 814.7 408 95.6
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 5.8e-234 814.3 534 78.7
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.5e-233 810.8 421 94.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.7e-231 805.4 560 74.6
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.6e-228 796.2 523 78.0
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.1e-227 791.6 523 77.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-221 773.5 502 75.3
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 5.7e-221 771.2 565 71.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.4e-221 770.8 558 71.7
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.2e-216 755.4 561 71.7
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.7e-212 743.0 392 92.6
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 8.2e-212 740.7 551 69.1
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.7e-196 689.9 507 71.0
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 4.7e-191 671.8 331 96.4
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 4.6e-170 602.1 312 90.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 2.6e-157 559.7 507 60.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.2e-149 534.3 557 56.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-146 524.2 262 94.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-138 496.9 462 58.0
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.4e-134 483.4 303 81.2
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 8.4e-132 474.9 568 51.2
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 9.3e-131 471.5 385 66.5
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.6e-130 470.7 509 53.2
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.9e-129 466.1 254 89.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.5e-128 463.4 293 79.5
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-121 441.4 499 49.9
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-120 438.0 562 47.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-114 417.5 233 88.4
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.3e-113 414.5 350 62.6
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.4e-110 403.7 196 96.9
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-102 377.9 300 68.7
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 6.5e-100 369.0 245 76.7
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 8.8e-97 358.6 267 68.5
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-96 357.1 321 63.2
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.4e-94 350.5 214 78.5
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-92 344.0 167 97.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.2e-91 340.1 183 86.9
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.3e-84 318.2 154 96.1
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.8e-84 316.6 160 91.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.1e-82 310.8 158 93.7
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 7.0e-70 269.2 154 86.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.9e-68 263.8 160 81.2
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.4e-65 255.0 159 80.5
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-54 216.5 122 87.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.4e-49 201.8 105 92.4
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.1e-49 200.7 126 79.4
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 3.7e-47 193.7 113 87.6
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.0e-45 186.4 134 70.9
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.5e-43 181.8 275 42.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.4e-33 148.7 96 79.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.8e-33 148.3 140 60.7
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 7.8e-29 132.9 75 89.3
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 9.6e-27 125.9 86 75.6
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 2.1e-26 124.8 73 86.3
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-22 111.3 55 98.2
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-19 101.7 58 86.2
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 4.3e-19 100.5 60 86.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 2.1e-18 98.2 60 85.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 4.8e-18 97.1 49 98.0
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 6.9e-17 93.2 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.0e-16 91.7 53 84.9
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-15 86.7 44 86.4
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-14 84.7 59 71.2
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 4.2e-14 84.0 88 59.1
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 4.6e-13 80.5 51 82.4
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 9.3e-06 56.2 31 80.6


User provided reference genes

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