Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G289200 Prunus persica HOM05D002459 ORTHO05D016264 3.2e-66 255.0 131 100.0
Prupe.4G288400 Prunus persica HOM05D002459 ORTHO05D003006 1.9e-50 202.6 128 85.9
MD03G1233800 Malus domestica HOM05D002459 ORTHO05D003006 5.1e-48 194.5 128 81.2
MD03G1212700 Malus domestica HOM05D002459 ORTHO05D003006 6.6e-48 194.1 128 81.2
CiPaw.15G185000 Carya illinoinensis HOM05D002459 ORTHO05D003006 1.4e-34 149.8 127 65.4
RcHm_v2.0_Chr3g0485061 Rosa chinensis HOM05D002459 ORTHO05D003006 1.3e-32 143.3 126 67.5
FAN23G2218 Fragaria x ananassa HOM05D002459 ORTHO05D003006 1.5e-31 139.8 123 65.9
Ciclev10025262m.g Citrus clementina HOM05D002459 ORTHO05D003006 1.9e-31 139.4 128 62.5
FAN28G0087 Fragaria x ananassa HOM05D002459 ORTHO05D003006 2.5e-31 139.0 123 65.0
vmacro08855 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 4.3e-31 138.3 128 57.8
Cfa020920 Carpinus fangiana HOM05D002459 ORTHO05D003006 9.6e-31 137.1 128 58.6
FvH4_1g25920 Fragaria vesca HOM05D002459 ORTHO05D003006 1.3e-30 136.7 123 65.0
FAN19G1658 Fragaria x ananassa HOM05D002459 ORTHO05D003006 1.3e-30 136.7 123 65.0
Gohir.D10G109900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.3e-30 136.7 127 59.8
Gohir.D10G110000 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.3e-30 136.7 127 59.8
Gorai.011G121000 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.3e-30 136.7 127 59.8
Gorai.011G121100 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.3e-30 136.7 127 59.8
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 1.6e-30 136.3 123 64.2
Gohir.A10G158600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-30 135.6 127 59.1
Gohir.A10G158700 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-30 135.6 127 58.3
Thecc.01G146500 Theobroma cacao HOM05D002459 ORTHO05D003006 6.2e-30 134.4 127 59.8
TWI31G0101 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 6.2e-30 134.4 128 57.8
ClCG02G000180 Citrullus lanatus HOM05D002459 ORTHO05D003006 2.4e-29 132.5 127 57.5
Actinidia19945 Actinidia chinensis HOM05D002459 ORTHO05D003006 3.1e-29 132.1 131 58.0
MELO3C023207.2 Cucumis melo HOM05D002459 ORTHO05D003006 5.3e-29 131.3 127 57.5
Rhsim11G0171500 Rhododendron simsii HOM05D002459 ORTHO05D003006 1.2e-28 130.2 130 53.8
Sed0019408 Sechium edule HOM05D002459 ORTHO05D003006 1.2e-28 130.2 127 55.9
Lalb_Chr23g0272791 Lupinus albus HOM05D002459 ORTHO05D003006 2.6e-28 129.0 127 55.1
Manes.12G081200 Manihot esculenta HOM05D002459 ORTHO05D003006 2.6e-28 129.0 125 59.2
Sed0019392 Sechium edule HOM05D002459 ORTHO05D003006 3.4e-28 128.6 127 55.9
RhsimUnG0197500 Rhododendron simsii HOM05D002459 ORTHO05D003006 7.6e-28 127.5 128 54.7
Dinv07279 Davidia involucrata HOM05D002459 ORTHO05D003006 9.9e-28 127.1 128 57.0
Rhsim04G0129300 Rhododendron simsii HOM05D002459 ORTHO05D003006 9.9e-28 127.1 128 54.7
arahy.Tifrunner.gnm1.ann1.30VNIJ Arachis hypogaea HOM05D002459 ORTHO05D003006 1.7e-27 126.3 127 53.5
arahy.Tifrunner.gnm1.ann1.QD9RQK Arachis hypogaea HOM05D002459 ORTHO05D003006 1.7e-27 126.3 127 53.5
CsaV3_2G019630 Cucumis sativus L. HOM05D002459 ORTHO05D003006 2.2e-27 125.9 126 56.3
Lj1g0008149 Lotus japonicus HOM05D002459 ORTHO05D003006 2.9e-27 125.6 127 52.8
Rhsim04G0059000 Rhododendron simsii HOM05D002459 ORTHO05D003006 3.8e-27 125.2 124 54.8
arahy.Tifrunner.gnm1.ann1.S107GV Arachis hypogaea HOM05D002459 ORTHO05D003006 8.4e-27 124.0 127 52.8
GSVIVG01000245001 Vitis vinifera HOM05D002459 ORTHO05D003006 1.1e-26 123.6 127 56.7
CAN.G10.9 Capsicum annuum HOM05D002459 ORTHO05D003006 1.4e-26 123.2 127 52.0
Lalb_Chr12g0202691 Lupinus albus HOM05D002459 ORTHO05D003006 1.9e-26 122.9 131 51.9
vmacro19786 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 1.9e-26 122.9 128 53.9
Ca_17044_v3 Cicer arietinum L. HOM05D002459 ORTHO05D003006 3.2e-26 122.1 127 54.3
Glyma.06G161700 Glycine max HOM05D002459 ORTHO05D003006 3.2e-26 122.1 128 56.2
Solyc04g025300.3 Solanum lycopersicum HOM05D002459 ORTHO05D003006 3.2e-26 122.1 127 52.0
VMungo1127G0706 Vigna mungo HOM05D002459 ORTHO05D003006 5.5e-26 121.3 128 55.5
Peaxi162Scf00651g00012 Petunia axillaris HOM05D002459 ORTHO05D003006 7.1e-26 120.9 127 52.8
Phvul.009G159600 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 9.3e-26 120.6 128 55.5
Glyma.04G203600 Glycine max HOM05D002459 ORTHO05D003006 1.6e-25 119.8 128 55.5
Sopen04g011950 Solanum pennellii HOM05D002459 ORTHO05D003006 2.1e-25 119.4 127 51.2
Medtr3g098260 Medicago truncatula HOM05D002459 ORTHO05D003006 2.7e-25 119.0 128 53.1
TWI79G0941 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 6.0e-25 117.9 128 52.3
Phvul.002G279500 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 7.9e-25 117.5 126 54.8
Eucgr.H05056 Eucalyptus grandis HOM05D002459 ORTHO05D003006 2.3e-24 115.9 126 54.0
Glyma.05G198500 Glycine max HOM05D002459 ORTHO05D003006 3.0e-24 115.5 126 52.4
Lalb_Chr07g0184801 Lupinus albus HOM05D002459 ORTHO05D003006 3.0e-24 115.5 131 50.4
Atru.chr3.1464 Acer truncatum HOM05D002459 ORTHO05D003006 3.9e-24 115.2 129 55.0
Lj1C953T6 Lonicera japonica HOM05D002459 ORTHO05D003006 3.9e-24 115.2 124 53.2
TPR.G7788 Trifolium pratense HOM05D002459 ORTHO05D003006 1.1e-23 113.6 127 52.0
TPR.G7802 Trifolium pratense HOM05D002459 ORTHO05D003006 5.6e-23 111.3 127 52.0
EL10Ac4g09741 Beta vulgaris HOM05D002459 ORTHO05D003006 2.8e-22 109.0 128 48.4
AL6G34840 Arabidopsis lyrata HOM05D002459 ORTHO05D003006 3.7e-22 108.6 131 51.1
MBI03_g05194_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 4.0e-21 105.1 124 50.0
Sabra04G0083500 Salix brachista HOM05D002459 ORTHO05D003006 4.0e-21 105.1 125 48.0
DCAR_019949 Daucus carota HOM05D002459 ORTHO05D003006 5.3e-21 104.8 126 47.6
AUR62006969 Chenopodium quinoa HOM05D002459 ORTHO05D003006 1.2e-20 103.6 128 46.9
MBI06_g32146_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 2.0e-20 102.8 126 50.8
Lj4A821T47 Lonicera japonica HOM05D002459 ORTHO05D003006 2.6e-20 102.4 128 44.5
COL.COLO4_33528 Corchorus olitorius HOM05D002459 ORTHO05D003006 3.4e-20 102.1 128 48.4
Sc06g0005290 Simmondsia chinensis HOM05D002459 ORTHO05D003006 4.5e-20 101.7 128 47.7
Psat5g053480 Pisum sativum HOM05D002459 ORTHO05D003006 1.7e-19 99.8 127 48.8
VMungo0251G2061 Vigna mungo HOM05D002459 ORTHO05D003006 2.2e-19 99.4 126 47.6
SGA_v2.0_scaffold34G13683 Striga asiatica HOM05D002459 ORTHO05D003006 4.9e-19 98.2 124 46.0
Manes.07G014000 Manihot esculenta HOM05D002459 ORTHO05D003006 6.5e-19 97.8 122 49.2
TAR376G0537 Trochodendron aralioides HOM05D002459 ORTHO05D003006 8.4e-19 97.4 127 48.0
Cpa.g.sc138.39 Carica papaya HOM05D002459 ORTHO05D003006 1.1e-18 97.1 140 45.7
Nitab4.5_0000027g0300 Nicotiana tabacum HOM05D002459 ORTHO05D003006 1.4e-18 96.7 126 46.0
CSS0046129 Camellia sinensis var. sinensis HOM05D002459 ORTHO05D003006 4.2e-18 95.1 128 45.3
Nitab4.5_0000218g0100 Nicotiana tabacum HOM05D002459 ORTHO05D003006 4.2e-18 95.1 127 44.9
Potri.003G021000 Populus trichocarpa HOM05D002459 ORTHO05D003006 5.5e-18 94.7 125 48.0
Nitab4.5_0008981g0010 Nicotiana tabacum HOM05D002459 ORTHO05D003006 1.2e-17 93.6 126 46.0
THA.LOC104800496 Tarenaya hassleriana HOM05D002459 ORTHO05D003006 1.2e-17 93.6 125 44.8
Lsat_1_v5_gn_5_78841 Lactuca sativa HOM05D002459 ORTHO05D003006 4.6e-17 91.7 128 47.7
Manes.10G131600 Manihot esculenta HOM05D002459 ORTHO05D003006 4.6e-17 91.7 125 49.6
Duzib052G0687 Durio zibethinus HOM05D002459 ORTHO05D003006 6.0e-17 91.3 129 41.9
Sabra03G0012200 Salix brachista HOM05D002459 ORTHO05D003006 6.0e-17 91.3 138 43.5
Thecc.02G040600 Theobroma cacao HOM05D002459 ORTHO05D003006 6.0e-17 91.3 129 41.9
HPP92_004640 Vanilla planifolia HOM05D002459 ORTHO05D003006 6.0e-17 91.3 127 44.1
DCAR_019952 Daucus carota HOM05D002459 ORTHO05D003006 7.9e-17 90.9 126 43.7
Os12g0197500 Oryza sativa ssp. japonica HOM05D002459 ORTHO05D003006 7.9e-17 90.9 127 44.1
TWI63G0704 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 1.0e-16 90.5 124 47.6
Cpa.g.sc2.10 Carica papaya HOM05D002459 ORTHO05D003006 1.8e-16 89.7 127 44.9
CDE12G0492 Ceratophyllum demersum HOM05D002459 ORTHO05D003006 3.0e-16 89.0 128 42.2
Thhalv10003814m.g Eutrema salsugineum HOM05D002459 ORTHO05D003006 3.0e-16 89.0 128 45.3
Gohir.D05G009600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 3.0e-16 89.0 128 46.1
Gorai.009G009900 Gossypium raimondii HOM05D002459 ORTHO05D003006 3.0e-16 89.0 128 46.1
Sabra07G0079300 Salix brachista HOM05D000044 ORTHO05D003006 3.0e-16 89.0 125 45.6
Medtr3g098240 Medicago truncatula HOM05D002459 ORTHO05D003006 8.7e-16 87.4 128 43.8
CARHR189950 Cardamine hirsuta HOM05D002459 ORTHO05D003006 1.1e-15 87.0 125 43.2
Duzib132G0430 Durio zibethinus HOM05D002459 ORTHO05D003006 1.1e-15 87.0 128 42.2
Haze_19354 Corylus avellana HOM05D002459 ORTHO05D003006 1.5e-15 86.7 128 43.8
ECA236G2382 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.9e-15 86.3 129 42.6
PSO210G2919 Papaver somniferum HOM05D002459 ORTHO05D003006 1.9e-15 86.3 128 42.2
Aa31LG11G2970 Aethionema arabicum HOM05D002459 ORTHO05D003006 2.5e-15 85.9 125 44.0
PSO210G5621 Papaver somniferum HOM05D002459 ORTHO05D003006 3.3e-15 85.5 128 43.0
QL02p098579 Quercus lobata HOM05D002459 ORTHO05D003006 4.3e-15 85.1 127 47.2
DCAR_019950 Daucus carota HOM05D002459 ORTHO05D003006 5.7e-15 84.7 126 42.1
Sp2g23630 Schrenkiella parvula HOM05D002459 ORTHO05D003006 9.6e-15 84.0 130 43.1
Glyma.15G175600 Glycine max HOM05D002459 ORTHO05D016788 3.7e-14 82.0 104 50.0
Gohir.A01G177500 Gossypium hirsutum HOM05D002459 ORTHO05D003006 3.7e-14 82.0 127 38.6
HanXRQChr12g0359071 Helianthus annuus HOM05D002459 ORTHO05D003006 3.1e-13 79.0 127 41.7
Zm00001eb138430 Zea mays HOM05D002459 ORTHO05D003006 4.1e-13 78.6 125 42.4
Gohir.D01G168400 Gossypium hirsutum HOM05D002459 ORTHO05D003006 6.9e-13 77.8 127 37.8
Gorai.002G209000 Gossypium raimondii HOM05D002459 ORTHO05D003006 6.9e-13 77.8 127 37.8
Zm00001eb264310 Zea mays HOM05D002459 ORTHO05D003006 6.9e-13 77.8 127 40.2
BolC7t44926H Brassica oleracea HOM05D002459 ORTHO05D003006 2.0e-12 76.3 127 41.7
BraA06t26381Z Brassica rapa HOM05D002459 ORTHO05D003006 2.0e-12 76.3 127 41.7
Cc00_g00830 Coffea canephora HOM05D002459 ORTHO05D003006 2.0e-12 76.3 77 54.5
Cc00_g17640 Coffea canephora HOM05D002459 ORTHO05D016788 2.0e-12 76.3 77 54.5
Potri.018G137400 Populus trichocarpa HOM05D002459 ORTHO05D003006 2.0e-12 76.3 127 37.8
Potri.T045700 Populus trichocarpa HOM05D002459 ORTHO05D003006 2.0e-12 76.3 127 37.8
QL10p037432 Quercus lobata HOM05D002459 ORTHO05D003006 2.0e-12 76.3 124 43.5
Ah.11g042130 Amaranthus hybridus HOM05D002459 ORTHO05D003006 3.4e-12 75.5 127 40.2
Glyma.08G184600 Glycine max HOM05D002459 ORTHO05D003006 5.0e-11 71.6 123 39.8
Hma1.2p1_0057F.1_g031880 Hydrangea macrophylla HOM05D002459 ORTHO05D003006 5.0e-11 71.6 124 40.3
TPR.G2066 Trifolium pratense HOM05D002459 ORTHO05D003006 5.0e-11 71.6 126 36.5
Gohir.D02G232600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 6.5e-11 71.2 123 36.6
Aqoxy5G01674 Aquilegia oxysepala HOM05D002459 ORTHO05D003006 1.1e-10 70.5 123 40.7
C07p43980 Brassica napus HOM05D002459 ORTHO05D003006 1.1e-10 70.5 127 40.2
Migut.L00020 Erythranthe guttata HOM05D002459 ORTHO05D003006 1.9e-10 69.7 127 37.8
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 2.5e-10 69.3 58 65.5
PGSC0003DMG400030985 Solanum tuberosum HOM05D002459 ORTHO05D003006 2.5e-10 69.3 127 37.8
Ca_00087_v3 Cicer arietinum L. HOM05D002459 ORTHO05D003006 4.2e-10 68.6 126 35.7
Ca_29926_v3 Cicer arietinum L. HOM05D002459 ORTHO05D003006 4.2e-10 68.6 126 35.7
Medtr2g007690 Medicago truncatula HOM05D002459 ORTHO05D003006 5.5e-10 68.2 123 37.4
Gorai.005G260400 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.2e-09 67.0 123 35.0
Sopen05g001470 Solanum pennellii HOM05D002459 ORTHO05D016788 1.2e-09 67.0 128 37.5
Psat1g224240 Pisum sativum HOM05D002459 ORTHO05D003006 1.6e-09 66.6 126 35.7
Gohir.A11G239320 Gossypium hirsutum HOM05D002459 ORTHO05D016264 2.7e-09 65.9 53 66.0
Gohir.A12G059950 Gossypium hirsutum HOM05D000809 ORTHO05D016264 2.7e-09 65.9 77 54.5
Gohir.D01G060833 Gossypium hirsutum HOM05D002459 ORTHO05D016264 2.7e-09 65.9 53 66.0
Gorai.001G260200 Gossypium raimondii HOM05D000809 ORTHO05D016264 2.7e-09 65.9 77 54.5
Gohir.D10G166101 Gossypium hirsutum HOM05D000809 ORTHO05D016264 2.3e-08 62.8 77 53.2
Lj6g0008819 Lotus japonicus HOM05D002459 ORTHO05D003006 2.3e-08 62.8 126 37.3
Haze_21575 Corylus avellana HOM05D002459 ORTHO05D016264 3.0e-08 62.4 66 51.5
Oeu032236.1 Olea europaea HOM05D002459 ORTHO05D003006 5.1e-08 61.6 128 34.4
Carub.0006s2134 Capsella rubella HOM05D002459 ORTHO05D003006 8.7e-08 60.8 69 58.0
PGR102G2142 Punica granatum HOM05D002459 ORTHO05D003006 1.1e-07 60.5 130 34.6
Gohir.D08G175550 Gossypium hirsutum HOM05D002459 ORTHO05D016264 1.5e-07 60.1 44 70.5
CANSAT54G2711 Cannabis sativa HOM05D002459 ORTHO05D003006 2.5e-07 59.3 124 37.9
TAR628G1469 Trochodendron aralioides HOM05D002459 ORTHO05D003006 2.5e-07 59.3 124 40.3
C05p29240 Brassica napus HOM05D002459 ORTHO05D016788 5.7e-07 58.2 80 47.5
BolC5t31656H Brassica oleracea HOM05D002459 ORTHO05D016788 5.7e-07 58.2 80 47.5
ECA234G2178 Erigeron canadensis HOM05D002459 ORTHO05D003006 9.7e-07 57.4 127 36.2
SalBow2G2239 Salvia bowleyana HOM05D002459 ORTHO05D003006 3.7e-06 55.5 64 46.9
SalBow2G2283 Salvia bowleyana HOM05D002459 ORTHO05D003006 3.7e-06 55.5 64 46.9
BcaC05g26949 Brassica carinata HOM05D002459 ORTHO05D016788 4.8e-06 55.1 75 46.7
C05p27960 Brassica napus HOM05D002459 ORTHO05D016788 4.8e-06 55.1 75 46.7
BolC5t31522H Brassica oleracea HOM05D002459 ORTHO05D016788 4.8e-06 55.1 75 46.7
Nitab4.5_0003717g0010 Nicotiana tabacum HOM05D002459 ORTHO05D003006 4.8e-06 55.1 51 56.9
Oeu032230.1 Olea europaea HOM05D002459 ORTHO05D003006 4.8e-06 55.1 65 46.2
arahy.Tifrunner.gnm1.ann1.9Z02BP Arachis hypogaea HOM05D002459 ORTHO05D003006 8.2e-06 54.3 48 60.4


User provided reference genes

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