Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 2097.8 1104 100.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 0.0e+00 1469.1 1251 67.1
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1380.9 1252 63.3
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1291.9 1240 58.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 0.0e+00 1286.9 1249 58.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1275.8 1284 56.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1224.5 1150 61.3
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1176.8 1181 58.8
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1155.2 1240 54.4
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1149.4 1150 56.0
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1119.0 1172 54.6
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1112.4 1140 57.9
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1106.7 1148 56.4
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1100.1 1138 56.5
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1098.6 1143 57.3
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1087.4 1149 53.4
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1082.4 1156 52.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1079.7 1160 55.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 3.3e-310 1068.5 1206 53.2
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 1.4e-308 1063.1 1159 53.7
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.5e-307 1058.5 1175 52.7
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 8.8e-303 1043.9 1142 52.9
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.0e-298 1030.4 1232 49.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.9e-298 1028.9 1138 54.2
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 9.5e-297 1023.8 1160 53.6
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 6.1e-296 1021.1 1165 54.4
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.3e-295 1019.2 1203 50.4
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.5e-294 1016.5 1052 56.8
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 8.3e-293 1010.7 1168 53.3
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 1.0e-287 993.8 1144 53.3
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.7e-285 985.3 929 57.8
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.7e-283 979.2 929 57.6
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.8e-280 969.1 1168 51.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.7e-280 968.4 1106 50.7
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.3e-279 966.1 1060 54.2
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 9.8e-278 960.7 1096 51.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.0e-274 950.7 1154 50.9
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.0e-274 950.7 1130 49.2
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.5e-273 946.8 1235 49.1
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 8.1e-272 941.0 1132 48.3
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 3.7e-269 932.2 1119 48.6
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 6.4e-269 931.4 1199 47.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 5.4e-268 928.3 1278 45.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 7.1e-268 927.9 1082 49.2
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.6e-267 926.8 1161 50.0
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 3.5e-267 925.6 1242 45.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.8e-267 924.5 1180 46.3
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.5e-265 919.5 1177 47.2
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.5e-265 919.5 1161 49.4
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 6.2e-264 914.8 1168 46.6
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 8.1e-264 914.4 654 70.9
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 4.0e-263 912.1 1192 45.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 5.8e-262 908.3 1178 48.0
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.9e-261 906.0 1117 48.2
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.4e-260 903.7 1173 48.2
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 4.6e-259 898.7 1177 45.8
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.7e-258 896.7 1186 46.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 3.0e-258 896.0 1109 48.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.0e-258 896.0 1108 48.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 4.7e-256 888.6 1181 45.2
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 4.7e-256 888.6 1170 46.0
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 6.2e-256 888.3 1243 45.9
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.1e-256 887.9 1102 46.7
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.5e-254 883.6 1127 48.2
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.0e-254 883.2 1104 46.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 7.6e-254 881.3 1183 44.9
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.6e-254 881.3 1181 45.0
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.7e-250 870.2 1203 45.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.1e-249 867.5 1170 45.0
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.8e-247 860.1 1275 44.1
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 5.3e-247 858.6 1169 45.2
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.7e-245 853.6 1139 44.4
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.7e-245 853.6 1133 44.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 5.4e-244 848.6 1177 46.5
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 5.4e-244 848.6 902 51.7
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 6.2e-240 835.1 1122 45.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 6.4e-237 825.1 1230 42.7
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 7.1e-236 821.6 1133 44.6
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.6e-235 820.5 1184 43.8
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.7e-235 819.7 1171 44.3
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.5e-235 819.3 1277 43.1
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 6.7e-234 815.1 1069 48.1
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.3e-232 810.8 1131 44.5
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 3.1e-231 806.2 1101 44.8
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 5.3e-231 805.4 1161 43.8
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 5.8e-230 802.0 1162 43.7
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 7.1e-228 795.0 1148 43.6
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 6.7e-226 788.5 688 58.1
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-225 787.7 1142 43.1
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.1e-223 781.2 1065 45.8
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 4.8e-216 755.7 643 60.3
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.8e-210 737.3 1166 42.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.8e-210 737.3 1166 42.4
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.7e-210 735.3 904 47.9
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.2e-208 730.3 916 47.1
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 8.5e-205 718.4 949 44.4
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.4e-204 717.6 1050 45.2
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 8.8e-202 708.4 915 46.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.6e-201 706.8 976 44.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 9.1e-199 698.4 909 46.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.2e-190 671.4 845 47.2
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.0e-190 670.6 662 53.5
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.2e-188 662.9 475 72.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 8.6e-181 638.6 843 45.7
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 4.9e-176 622.9 644 53.0
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 9.8e-169 598.6 939 41.0
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.0e-166 590.9 1003 39.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-164 585.1 520 60.8
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 8.1e-155 552.4 783 44.2
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 7.6e-153 545.8 710 47.5
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.7e-149 534.6 775 43.0
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 7.3e-148 529.3 842 40.9
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.2e-120 438.0 973 36.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 4.2e-119 433.7 970 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 3.7e-115 420.6 744 36.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 5.3e-106 390.2 339 58.7
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.7e-104 385.2 659 37.3
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.7e-102 377.9 941 33.4
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.1e-100 372.5 315 63.8
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-94 351.3 631 38.8
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.7e-94 351.3 304 61.2
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.5e-89 335.5 758 34.3
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.4e-85 322.4 272 59.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.6e-84 318.2 285 56.8
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.2e-67 261.9 465 46.5
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.8e-66 258.8 354 42.9
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.3e-64 252.7 411 35.8
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.9e-31 142.5 613 27.4
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.6e-30 139.4 276 34.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-29 136.7 251 39.8
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 9.3e-26 123.6 298 30.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.0e-24 118.6 259 35.1
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 6.4e-11 74.3 104 44.2
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 3.5e-09 68.6 134 40.3
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 1.0e-08 67.0 47 70.2
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 1.9e-07 62.8 47 66.0
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 7.4e-07 60.8 87 48.3


User provided reference genes

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