Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G250600 Prunus persica HOM05D000203 ORTHO05D334322 1.2e-69 266.9 190 100.0
Prupe.6G119400 Prunus persica HOM05D000203 ORTHO05D000135 1.7e-12 77.0 68 58.8
Prupe.6G119300 Prunus persica HOM05D000203 ORTHO05D000135 2.2e-12 76.6 61 62.3
MD03G1135000 Malus domestica HOM05D000203 ORTHO05D000135 2.5e-11 73.2 59 62.7
Prupe.6G124000 Prunus persica HOM05D000203 ORTHO05D000135 2.1e-10 70.1 59 59.3
MD11G1157700 Malus domestica HOM05D000203 ORTHO05D000135 3.6e-10 69.3 206 33.0
PGSC0003DMG400039835 Solanum tuberosum HOM05D000203 ORTHO05D000135 3.0e-09 66.2 63 49.2
PGSC0003DMG400046733 Solanum tuberosum HOM05D000203 ORTHO05D000135 2.0e-08 63.5 63 49.2
Cfa020086 Carpinus fangiana HOM05D000203 ORTHO05D000135 2.6e-08 63.2 57 52.6
Haze_20105 Corylus avellana HOM05D000203 ORTHO05D000135 9.7e-08 61.2 57 54.4
FAN15G2402 Fragaria x ananassa HOM05D000203 ORTHO05D000135 9.7e-08 61.2 56 51.8
Solyc01g080785.1 Solanum lycopersicum HOM05D000203 ORTHO05D000135 9.7e-08 61.2 57 50.9
RcHm_v2.0_Chr6g0247811 Rosa chinensis HOM05D000203 ORTHO05D000135 1.3e-07 60.8 56 50.0
Sopen01g030700 Solanum pennellii HOM05D000203 ORTHO05D000135 1.3e-07 60.8 66 43.9
Sopen01g030710 Solanum pennellii HOM05D000203 ORTHO05D000135 1.3e-07 60.8 57 50.9
VMungo0251G1515 Vigna mungo HOM05D000203 ORTHO05D000135 1.3e-07 60.8 62 48.4
Cfa011044 Carpinus fangiana HOM05D000203 ORTHO05D000135 1.7e-07 60.5 60 56.7
RcHm_v2.0_Chr6g0245901 Rosa chinensis HOM05D000203 ORTHO05D000135 1.7e-07 60.5 56 48.2
Ca_22979_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 2.2e-07 60.1 59 45.8
PGSC0003DMG400006290 Solanum tuberosum HOM05D000203 ORTHO05D000135 2.2e-07 60.1 66 45.5
Lj5g0010179 Lotus japonicus HOM05D000203 ORTHO05D000135 2.8e-07 59.7 58 50.0
PGR031G1266 Punica granatum HOM05D000203 ORTHO05D000135 2.8e-07 59.7 60 53.3
PGR083G0216 Punica granatum HOM05D000203 ORTHO05D000135 2.8e-07 59.7 62 41.9
CARHR028570 Cardamine hirsuta HOM05D000203 ORTHO05D000135 3.7e-07 59.3 59 49.2
Eucgr.D00312 Eucalyptus grandis HOM05D000203 ORTHO05D000135 3.7e-07 59.3 62 43.5
Lalb_Chr07g0187161 Lupinus albus HOM05D000203 ORTHO05D000135 3.7e-07 59.3 59 52.5
Prupe.8G152000 Prunus persica HOM05D000203 ORTHO05D000135 3.7e-07 59.3 56 48.2
Eucgr.D00313 Eucalyptus grandis HOM05D000203 ORTHO05D000135 4.8e-07 58.9 62 43.5
Lj3g0020109 Lotus japonicus HOM05D000203 ORTHO05D000135 4.8e-07 58.9 63 49.2
MD10G1112400 Malus domestica HOM05D000203 ORTHO05D000135 4.8e-07 58.9 56 48.2
Phvul.002G309400 Phaseolus vulgaris HOM05D000203 ORTHO05D000135 4.8e-07 58.9 62 46.8
Prupe.2G047900 Prunus persica HOM05D000203 ORTHO05D000135 4.8e-07 58.9 56 48.2
TWI36G0397 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 4.8e-07 58.9 63 44.4
TWI75G1001 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 4.8e-07 58.9 63 44.4
FAN09G0429 Fragaria x ananassa HOM05D000203 ORTHO05D000135 6.3e-07 58.5 56 46.4
Lalb_Chr13g0294081 Lupinus albus HOM05D000203 ORTHO05D000135 6.3e-07 58.5 58 48.3
BcaC07g40902 Brassica carinata HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
A09p56080 Brassica napus HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
C08p39000 Brassica napus HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
BolC8t51474H Brassica oleracea HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
BraA09t41003Z Brassica rapa HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
Thhalv10000479m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
Thhalv10003338m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 8.2e-07 58.2 59 47.5
Lj4g0021882 Lotus japonicus HOM05D000203 ORTHO05D000135 8.2e-07 58.2 58 48.3
Medtr8g051580 Medicago truncatula HOM05D000203 ORTHO05D000135 8.2e-07 58.2 58 48.3
PGR031G2827 Punica granatum HOM05D000203 ORTHO05D000135 8.2e-07 58.2 60 51.7
Solyc01g060310.3 Solanum lycopersicum HOM05D000203 ORTHO05D000135 8.2e-07 58.2 58 46.6
FvH4_2g03020 Fragaria vesca HOM05D000203 ORTHO05D000135 1.1e-06 57.8 56 50.0
FAN24G1168 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.1e-06 57.8 56 50.0
Potri.008G041500 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.1e-06 57.8 56 50.0
TAR628G0844 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.1e-06 57.8 62 51.6
Atru.chr12.1516 Acer truncatum HOM05D000203 ORTHO05D000135 1.4e-06 57.4 63 42.9
Atru.chr12.1519 Acer truncatum HOM05D000203 ORTHO05D000135 1.4e-06 57.4 63 42.9
CARHR116820 Cardamine hirsuta HOM05D000203 ORTHO05D000135 1.4e-06 57.4 59 47.5
RcHm_v2.0_Chr2g0139731 Rosa chinensis HOM05D000203 ORTHO05D000135 1.4e-06 57.4 56 48.2
Thecc.06G153600 Theobroma cacao HOM05D000203 ORTHO05D000135 1.4e-06 57.4 55 49.1
CiPaw.09G126300 Carya illinoinensis HOM05D000203 ORTHO05D000135 1.8e-06 57.0 55 49.1
FvH4_3g05940 Fragaria vesca HOM05D000203 ORTHO05D000135 1.8e-06 57.0 62 41.9
FAN11G3627 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.8e-06 57.0 62 41.9
Medtr8g046350 Medicago truncatula HOM05D000203 ORTHO05D000135 1.8e-06 57.0 58 44.8
THA.LOC104807204 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 1.8e-06 57.0 57 47.4
TPR.G11908 Trifolium pratense HOM05D000203 ORTHO05D000135 1.8e-06 57.0 61 47.5
GSVIVG01010218001 Vitis vinifera HOM05D000203 ORTHO05D000135 1.8e-06 57.0 56 50.0
Actinidia02447 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 50.0
Aqoxy2G03305 Aquilegia oxysepala HOM05D000203 ORTHO05D000135 2.4e-06 56.6 59 47.5
AL4G15890 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 2.4e-06 56.6 59 45.8
Carub.0004s0446 Capsella rubella HOM05D000203 ORTHO05D000135 2.4e-06 56.6 59 45.8
Ciclev10030387m.g Citrus clementina HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 46.4
Migut.D01313 Erythranthe guttata HOM05D000203 ORTHO05D000135 2.4e-06 56.6 55 50.9
FvH4_6g32050 Fragaria vesca HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 46.4
Hma1.2p1_1051F.1_g252240 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 46.4
Lj9C337T7 Lonicera japonica HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 46.4
Peaxi162Scf00249g00064 Petunia axillaris HOM05D000203 ORTHO05D000135 2.4e-06 56.6 56 48.2
Potri.001G251400 Populus trichocarpa HOM05D000203 ORTHO05D000135 2.4e-06 56.6 53 49.1
SHI42934 Sapria himalayana HOM05D000203 ORTHO05D000135 2.4e-06 56.6 59 44.1
Sopen01g026520 Solanum pennellii HOM05D000203 ORTHO05D000135 2.4e-06 56.6 58 44.8
PGSC0003DMG400046706 Solanum tuberosum HOM05D000203 ORTHO05D000135 2.4e-06 56.6 57 47.4
TPR.G11946 Trifolium pratense HOM05D000203 ORTHO05D000135 2.4e-06 56.6 61 47.5
AT2G24840 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
BcaB06g28019 Brassica carinata HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
BcaC02g08396 Brassica carinata HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
A04p19240 Brassica napus HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
C04p54730 Brassica napus HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
BolC4t27018H Brassica oleracea HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
BraA04t17524Z Brassica rapa HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
Ca_18156_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 3.1e-06 56.2 60 48.3
Migut.B00480 Erythranthe guttata HOM05D000203 ORTHO05D000135 3.1e-06 56.2 61 44.3
Migut.N01504 Erythranthe guttata HOM05D000203 ORTHO05D000135 3.1e-06 56.2 61 44.3
Lalb_Chr07g0189771 Lupinus albus HOM05D000203 ORTHO05D000135 3.1e-06 56.2 58 46.6
MD10G1264500 Malus domestica HOM05D000203 ORTHO05D000135 3.1e-06 56.2 58 44.8
Medtr3g080940 Medicago truncatula HOM05D000203 ORTHO05D000135 3.1e-06 56.2 56 44.6
Sp4g03860 Schrenkiella parvula HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 45.8
PGSC0003DMG400036190 Solanum tuberosum HOM05D000203 ORTHO05D000135 3.1e-06 56.2 63 46.0
PGSC0003DMG400044387 Solanum tuberosum HOM05D000203 ORTHO05D000135 3.1e-06 56.2 63 41.3
SGA_v2.0_scaffold172G38970 Striga asiatica HOM05D000203 ORTHO05D000135 3.1e-06 56.2 58 46.6
THA.LOC104806121 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 3.1e-06 56.2 59 47.5
TPR.G3865 Trifolium pratense HOM05D000203 ORTHO05D000135 3.1e-06 56.2 56 44.6
TAR636G2055 Trochodendron aralioides HOM05D000203 ORTHO05D000135 3.1e-06 56.2 68 47.1
CSS0003670 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 4.1e-06 55.8 56 48.2
CSS0030150 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 4.1e-06 55.8 56 48.2
CAN.G730.11 Capsicum annuum HOM05D000203 ORTHO05D000135 4.1e-06 55.8 63 41.3
CAN.G730.20 Capsicum annuum HOM05D000203 ORTHO05D000135 4.1e-06 55.8 63 41.3
CAN.G730.7 Capsicum annuum HOM05D000203 ORTHO05D000135 4.1e-06 55.8 63 41.3
Duzib160G0196 Durio zibethinus HOM05D000203 ORTHO05D000135 4.1e-06 55.8 60 48.3
Duzib192G0997 Durio zibethinus HOM05D000203 ORTHO05D000135 4.1e-06 55.8 58 43.1
Migut.D01311 Erythranthe guttata HOM05D000203 ORTHO05D000135 4.1e-06 55.8 55 49.1
Migut.D01314 Erythranthe guttata HOM05D000203 ORTHO05D000135 4.1e-06 55.8 55 49.1
FvH4_3g36320 Fragaria vesca HOM05D000203 ORTHO05D000135 4.1e-06 55.8 62 40.3
FAN21G2663 Fragaria x ananassa HOM05D000203 ORTHO05D000135 4.1e-06 55.8 62 40.3
Glyma.05G227300 Glycine max HOM05D000203 ORTHO05D000135 4.1e-06 55.8 58 46.6
Hma1.2p1_1051F.1_g252260 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 4.1e-06 55.8 53 52.8
Lj4P772T17 Lonicera japonica HOM05D000203 ORTHO05D000135 4.1e-06 55.8 56 46.4
PGR031G3936 Punica granatum HOM05D000203 ORTHO05D000135 4.1e-06 55.8 56 51.8
RcHm_v2.0_Chr3g0452161 Rosa chinensis HOM05D000203 ORTHO05D000135 4.1e-06 55.8 61 47.5
RcHm_v2.0_Chr3g0452171 Rosa chinensis HOM05D000203 ORTHO05D022673 4.1e-06 55.8 64 46.9
Solyc01g106710.1 Solanum lycopersicum HOM05D000203 ORTHO05D000135 4.1e-06 55.8 63 41.3
SGA_v2.0_scaffold32G12977 Striga asiatica HOM05D000203 ORTHO05D000135 4.1e-06 55.8 61 44.3
TAR628G1329 Trochodendron aralioides HOM05D000894 ORTHO05D001833 4.1e-06 55.8 55 50.9
vmacro01675 Vaccinium macrocarpon HOM05D000203 ORTHO05D000135 4.1e-06 55.8 55 49.1
vmacro23423 Vaccinium macrocarpon HOM05D000203 ORTHO05D051530 4.1e-06 55.8 55 49.1
Atru.chr10.1322 Acer truncatum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 54 48.1
Actinidia00347 Actinidia chinensis HOM05D000203 ORTHO05D000135 5.3e-06 55.5 56 48.2
A09p61410 Brassica napus HOM05D000203 ORTHO05D000135 5.3e-06 55.5 54 50.0
C08p44970 Brassica napus HOM05D000203 ORTHO05D000135 5.3e-06 55.5 54 50.0
BraA09t41512Z Brassica rapa HOM05D000203 ORTHO05D000135 5.3e-06 55.5 54 50.0
CAN.G730.23 Capsicum annuum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 63 41.3
CAN.G730.5 Capsicum annuum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 63 41.3
Cfa000969 Carpinus fangiana HOM05D000203 ORTHO05D000135 5.3e-06 55.5 53 49.1
FAN14G2267 Fragaria x ananassa HOM05D000203 ORTHO05D000135 5.3e-06 55.5 56 44.6
Glyma.08G034100 Glycine max HOM05D000203 ORTHO05D000135 5.3e-06 55.5 58 48.3
MD00G1046000 Malus domestica HOM05D000203 ORTHO05D000135 5.3e-06 55.5 59 50.8
MD05G1287100 Malus domestica HOM05D000203 ORTHO05D000135 5.3e-06 55.5 58 44.8
Nn4g25572 Nelumbo nucifera HOM05D000203 ORTHO05D000135 5.3e-06 55.5 55 49.1
Nitab4.5_0000047g0290 Nicotiana tabacum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 56 46.4
Nitab4.5_0001030g0170 Nicotiana tabacum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 58 41.4
Nitab4.5_0005046g0020 Nicotiana tabacum HOM05D000203 ORTHO05D000135 5.3e-06 55.5 56 46.4
Potri.004G130900 Populus trichocarpa HOM05D000203 ORTHO05D000135 5.3e-06 55.5 58 48.3
Prupe.4G077800 Prunus persica HOM05D000203 ORTHO05D000135 5.3e-06 55.5 58 44.8
Actinidia02433 Actinidia chinensis HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 48.2
Ah.01g017420 Amaranthus hybridus HOM05D000203 ORTHO05D000135 7.0e-06 55.1 57 47.4
Ah.13g077210 Amaranthus hybridus HOM05D000203 ORTHO05D000135 7.0e-06 55.1 52 50.0
CANSAT35G0268 Cannabis sativa HOM05D000203 ORTHO05D000135 7.0e-06 55.1 60 45.0
Dinv12564 Davidia involucrata HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 44.6
Migut.D01316 Erythranthe guttata HOM05D000203 ORTHO05D000135 7.0e-06 55.1 55 49.1
Gohir.A06G136800 Gossypium hirsutum HOM05D000203 ORTHO05D000135 7.0e-06 55.1 55 47.3
Gorai.010G165500 Gossypium raimondii HOM05D000203 ORTHO05D000135 7.0e-06 55.1 55 47.3
Hma1.2p1_0661F.1_g197940 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 46.4
Hma1.2p1_1758F.1_g301156 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 46.4
Nn1g08692 Nelumbo nucifera HOM05D000203 ORTHO05D000135 7.0e-06 55.1 62 46.8
Nitab4.5_0002011g0080 Nicotiana tabacum HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 46.4
Nitab4.5_0005046g0060 Nicotiana tabacum HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 46.4
Prupe.7G091400 Prunus persica HOM05D000203 ORTHO05D000135 7.0e-06 55.1 54 48.1
PGR004G0067 Punica granatum HOM05D000203 ORTHO05D000135 7.0e-06 55.1 63 44.4
QL05p059059 Quercus lobata HOM05D000203 ORTHO05D000135 7.0e-06 55.1 57 45.6
RcHm_v2.0_Chr2g0139721 Rosa chinensis HOM05D000203 ORTHO05D000135 7.0e-06 55.1 56 44.6
RcHm_v2.0_Chr5g0013531 Rosa chinensis HOM05D000203 ORTHO05D000135 7.0e-06 55.1 62 40.3
PGSC0003DMG400039595 Solanum tuberosum HOM05D000203 ORTHO05D000135 7.0e-06 55.1 61 50.8
Thecc.06G153500 Theobroma cacao HOM05D000203 ORTHO05D000135 7.0e-06 55.1 57 43.9
Actinidia04398 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.1e-06 54.7 53 47.2
Ah.01g017440 Amaranthus hybridus HOM05D000203 ORTHO05D000135 9.1e-06 54.7 55 49.1
BcaB08g36341 Brassica carinata HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 48.2
CAN.G504.5 Capsicum annuum HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 46.4
Cpa.g.c30689 Carica papaya HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 46.4
Cpa.g.sc505.4 Carica papaya HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 48.2
Duzib235G1529 Durio zibethinus HOM05D000203 ORTHO05D000135 9.1e-06 54.7 55 49.1
HanXRQChr14g0456481 Helianthus annuus HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 44.6
Nitab4.5_0000654g0100 Nicotiana tabacum HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 48.2
QL11p028766 Quercus lobata HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 46.4
Sabra09G0064900 Salix brachista HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 44.6
TPR.G9592 Trifolium pratense HOM05D000203 ORTHO05D000135 9.1e-06 54.7 61 45.9
TAR628G1410 Trochodendron aralioides HOM05D000203 ORTHO05D000135 9.1e-06 54.7 55 50.9
GSVIVG01021534001 Vitis vinifera HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 51.8
GSVIVG01037034001 Vitis vinifera HOM05D000203 ORTHO05D000135 9.1e-06 54.7 56 46.4
Zm00001eb286420 Zea mays HOM05D000203 ORTHO05D000135 9.1e-06 54.7 51 54.9


User provided reference genes

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