Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.9e-268 927.5 469 100.0
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.0e-191 673.7 488 71.5
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.3e-166 589.0 520 60.0
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.0e-163 579.7 587 54.5
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.5e-161 572.8 473 63.2
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 7.1e-161 571.2 586 53.8
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-160 570.5 458 64.8
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 2.1e-160 569.7 486 63.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.0e-159 567.4 478 61.5
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.3e-158 562.4 619 51.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.4e-158 561.2 589 52.5
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 9.6e-158 560.8 467 63.0
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 5.5e-153 545.0 478 59.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 7.1e-153 544.7 480 58.8
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.5e-150 537.0 462 59.5
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.5e-150 536.2 476 58.2
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.3e-149 533.9 476 57.6
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 6.3e-149 531.6 543 52.3
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 6.9e-148 528.1 446 59.6
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.5e-147 526.9 494 57.1
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.6e-147 526.2 467 58.0
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.3e-146 523.9 467 58.5
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.8e-146 522.3 473 58.6
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 6.5e-146 521.5 474 57.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.4e-143 513.8 467 57.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 3.9e-143 512.3 495 55.6
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 9.7e-142 507.7 440 58.6
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.7e-141 506.9 478 56.5
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.2e-141 506.5 441 58.5
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 6.3e-141 505.0 479 54.9
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.4e-140 503.1 528 52.8
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 3.8e-138 495.7 440 58.6
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 5.0e-138 495.4 488 52.9
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.6e-136 490.3 488 52.7
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 6.1e-136 488.4 475 54.3
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.8e-135 486.9 484 53.9
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 2.3e-135 486.5 455 55.8
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.0e-135 486.1 467 55.0
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 6.7e-135 485.0 437 57.9
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.1e-134 484.2 443 54.6
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 2.0e-134 483.4 448 54.5
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 9.7e-134 481.1 462 53.5
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.3e-133 480.7 441 55.1
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.4e-132 477.2 441 54.6
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.8e-132 476.9 448 54.7
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 3.1e-132 476.1 456 54.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 3.5e-131 472.6 447 55.5
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 5.9e-131 471.9 456 55.0
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 2.2e-130 469.9 472 51.3
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 2.9e-130 469.5 547 48.8
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 6.5e-130 468.4 459 52.7
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.2e-129 466.1 445 54.6
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 4.2e-129 465.7 405 58.8
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 7.2e-129 464.9 480 50.4
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 2.3e-127 459.9 486 50.6
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 8.8e-127 458.0 443 52.8
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.5e-126 457.2 487 50.1
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.8e-125 453.0 360 60.6
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.4e-124 450.7 443 53.7
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 5.3e-124 448.7 486 47.9
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 7.0e-124 448.4 457 53.0
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.0e-122 444.5 479 51.6
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 2.5e-121 439.9 452 53.1
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 4.7e-120 435.6 363 58.7
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 1.4e-119 434.1 435 53.1
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.4e-119 434.1 539 47.3
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-118 431.0 474 49.8
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.2e-118 431.0 446 50.4
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.5e-118 430.6 452 50.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 7.5e-118 428.3 392 54.8
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.3e-117 427.6 455 51.9
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.3e-117 427.6 623 42.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-116 424.5 450 50.4
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.2e-115 421.0 478 48.3
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.6e-115 420.6 452 50.7
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 5.9e-115 418.7 465 49.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.3e-114 417.5 469 50.1
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.7e-114 417.2 469 50.1
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.7e-114 417.2 268 73.5
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 6.5e-114 415.2 268 71.6
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 7.2e-113 411.8 472 48.5
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.6e-112 410.6 422 51.7
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.1e-112 410.2 479 48.2
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 3.6e-112 409.5 439 51.0
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 8.0e-112 408.3 394 53.0
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 5.2e-111 405.6 491 47.7
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.5e-110 404.1 492 47.4
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.4e-110 402.5 244 74.2
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.4e-110 402.5 244 74.2
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.8e-108 397.1 474 46.6
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 5.4e-108 395.6 480 46.7
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 9.1e-108 394.8 441 51.0
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.7e-107 393.3 482 47.3
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.5e-107 392.9 461 49.7
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.1e-105 387.9 501 44.3
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.6e-104 384.0 466 47.0
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.3e-103 380.2 468 47.0
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.6e-102 376.7 264 61.7
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 9.2e-100 368.2 385 52.7
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 9.2e-100 368.2 259 66.0
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.6e-99 367.5 379 52.5
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.0e-95 354.8 380 51.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 3.1e-95 353.2 381 51.7
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 3.1e-95 353.2 439 46.9
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 4.9e-93 345.9 467 43.5
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.2e-92 343.2 373 52.3
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 4.1e-92 342.8 591 38.2
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.0e-90 338.2 343 54.2
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 3.0e-90 336.7 440 45.0
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 8.6e-90 335.1 434 43.5
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.0e-87 326.2 436 45.2
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.8e-87 325.5 385 49.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.8e-86 322.4 401 47.1
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 7.5e-86 322.0 441 44.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.7e-85 319.7 461 43.6
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 3.9e-82 309.7 269 55.0
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 2.5e-81 307.0 357 49.3
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 5.8e-78 295.8 199 65.3
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 7.1e-76 288.9 254 53.5
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.3e-74 284.6 284 58.1
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.6e-73 278.5 346 47.1
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 4.2e-68 263.1 430 37.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 3.3e-65 253.4 503 33.4
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 5.6e-65 252.7 242 50.8
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 7.3e-65 252.3 480 35.8
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.3e-61 241.5 169 63.9
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.2e-48 196.1 293 41.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.4e-47 194.1 133 64.7
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 3.4e-38 163.7 428 32.5
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 6.5e-37 159.5 146 53.4
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.4e-36 158.3 194 51.0
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 9.3e-36 155.6 184 42.4
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-33 148.3 226 43.4
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 2.5e-33 147.5 237 40.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.6e-32 144.8 147 50.3
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-30 138.3 225 40.9
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-23 114.4 159 40.9
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 6.5e-21 106.3 102 50.0
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 8.5e-21 105.9 178 42.1
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 7.2e-20 102.8 75 62.7
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 9.4e-20 102.4 65 61.5
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 7.9e-19 99.4 67 56.7
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.0e-18 99.0 73 64.4
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.8e-18 98.2 102 56.9
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 2.3e-18 97.8 110 44.5
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 5.7e-17 93.2 91 56.0
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.8e-16 90.9 83 62.7
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.6e-09 67.8 78 50.0
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 3.1e-07 60.8 114 38.6
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 7.7e-06 56.2 102 34.3


User provided reference genes

Program Settings