Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G166600 Prunus persica HOM05D002561 ORTHO05D006466 3.4e-61 238.0 112 100.0
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 1.2e-21 106.7 102 58.8
Prupe.6G177000 Prunus persica HOM05D002561 ORTHO05D006466 1.2e-21 106.7 115 52.2
RcHm_v2.0_Chr6g0267881 Rosa chinensis HOM05D002561 ORTHO05D006466 1.2e-21 106.7 102 58.8
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.6e-21 105.5 102 57.8
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.6e-21 105.5 102 57.8
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 3.5e-21 105.1 102 57.8
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 1.0e-20 103.6 111 53.2
MD08G1220200 Malus domestica HOM05D002561 ORTHO05D006466 1.7e-20 102.8 110 54.5
Atru.chr6.2875 Acer truncatum HOM05D002561 ORTHO05D006466 1.3e-15 86.7 111 44.1
Actinidia11004 Actinidia chinensis HOM05D002561 ORTHO05D006466 1.3e-15 86.7 105 44.8
Actinidia11101 Actinidia chinensis HOM05D002561 ORTHO05D006466 1.3e-15 86.7 105 44.8
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 1.3e-15 86.7 105 46.7
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 1.3e-15 86.7 105 45.7
Nn1g06426 Nelumbo nucifera HOM05D002561 ORTHO05D006466 1.7e-15 86.3 105 46.7
MD15G1410700 Malus domestica HOM05D002561 ORTHO05D006466 2.2e-15 85.9 100 51.0
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 2.8e-15 85.5 105 44.8
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 2.8e-15 85.5 105 44.8
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 3.7e-15 85.1 105 43.8
MBI07_g29117_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D006466 3.7e-15 85.1 105 44.8
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 6.3e-15 84.3 105 44.8
Sed0023046 Sechium edule HOM05D002561 ORTHO05D006466 6.3e-15 84.3 105 43.8
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 8.2e-15 84.0 105 43.8
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 8.2e-15 84.0 105 44.8
TAR626G1404 Trochodendron aralioides HOM05D002561 ORTHO05D006466 8.2e-15 84.0 105 41.9
CANSAT64G1696 Cannabis sativa HOM05D002561 ORTHO05D006466 1.1e-14 83.6 101 45.5
Lj8C108T5 Lonicera japonica HOM05D002561 ORTHO05D006466 1.1e-14 83.6 105 45.7
Dinv00035 Davidia involucrata HOM05D002561 ORTHO05D006466 1.4e-14 83.2 105 42.9
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 1.4e-14 83.2 105 42.9
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 1.8e-14 82.8 102 47.1
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 1.8e-14 82.8 103 47.6
Peaxi162Scf00845g00022 Petunia axillaris HOM05D002561 ORTHO05D006466 1.8e-14 82.8 102 47.1
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 2.4e-14 82.4 105 43.8
MBI07_g29113_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D003010 2.4e-14 82.4 105 43.8
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 2.4e-14 82.4 105 43.8
Os01g0238900 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D006466 4.1e-14 81.6 108 42.6
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 5.3e-14 81.3 105 45.7
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 5.3e-14 81.3 105 44.8
Nitab4.5_0004546g0040 Nicotiana tabacum HOM05D002561 ORTHO05D006466 5.3e-14 81.3 105 44.8
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 7.0e-14 80.9 102 44.1
TAR624G0407 Trochodendron aralioides HOM05D002561 ORTHO05D006466 7.0e-14 80.9 105 41.9
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 9.1e-14 80.5 102 47.1
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 9.1e-14 80.5 105 41.9
Glyma.14G065100 Glycine max HOM05D002561 ORTHO05D006466 9.1e-14 80.5 104 45.2
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 9.1e-14 80.5 105 42.9
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 9.1e-14 80.5 102 47.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.2e-13 80.1 105 42.9
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 2.0e-13 79.3 107 42.1
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 2.0e-13 79.3 102 44.1
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 2.0e-13 79.3 102 44.1
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 2.0e-13 79.3 102 44.1
PSO832G1390 Papaver somniferum HOM05D002561 ORTHO05D006466 2.0e-13 79.3 102 44.1
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 2.7e-13 79.0 103 44.7
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 2.7e-13 79.0 105 41.9
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 2.7e-13 79.0 104 44.2
Solyc07g053660.3 Solanum lycopersicum HOM05D002561 ORTHO05D006466 2.7e-13 79.0 105 42.9
Sopen07g027630 Solanum pennellii HOM05D002561 ORTHO05D006466 2.7e-13 79.0 105 42.9
PGSC0003DMG401009395 Solanum tuberosum HOM05D002561 ORTHO05D006466 2.7e-13 79.0 105 42.9
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 3.5e-13 78.6 105 41.9
Phvul.006G037700 Phaseolus vulgaris HOM05D002561 ORTHO05D006466 3.5e-13 78.6 104 46.2
THA.LOC104804051 Tarenaya hassleriana HOM05D002561 ORTHO05D006466 3.5e-13 78.6 102 45.1
Lsat_1_v5_gn_4_64440 Lactuca sativa HOM05D002561 ORTHO05D006466 4.5e-13 78.2 103 42.7
Ciclev10015209m.g Citrus clementina HOM05D002561 ORTHO05D006466 7.7e-13 77.4 105 41.9
Rhsim06G0138000 Rhododendron simsii HOM05D002561 ORTHO05D006466 7.7e-13 77.4 102 43.1
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 1.0e-12 77.0 99 45.5
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 1.0e-12 77.0 105 40.0
PGR142G4043 Punica granatum HOM05D002561 ORTHO05D006466 1.3e-12 76.6 103 42.7
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 1.7e-12 76.3 105 41.0
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 1.7e-12 76.3 99 44.4
Hma1.2p1_0002F.1_g002200 Hydrangea macrophylla HOM05D002561 ORTHO05D006466 2.2e-12 75.9 103 40.8
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 2.9e-12 75.5 105 42.9
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 2.9e-12 75.5 105 42.9
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 2.9e-12 75.5 105 42.9
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 5.0e-12 74.7 102 41.2
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 5.0e-12 74.7 102 43.1
AUR62025466 Chenopodium quinoa HOM05D002561 ORTHO05D006466 6.5e-12 74.3 102 40.2
Potri.017G014700 Populus trichocarpa HOM05D002561 ORTHO05D006466 6.5e-12 74.3 102 43.1
TPR.G22970 Trifolium pratense HOM05D002561 ORTHO05D006466 6.5e-12 74.3 105 41.9
TWI14G0319 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 8.5e-12 73.9 102 44.1
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 8.5e-12 73.9 108 41.7
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 1.1e-11 73.6 102 42.2
TPR.G30494 Trifolium pratense HOM05D002561 ORTHO05D006466 1.5e-11 73.2 105 41.0
TWI59G1106 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 1.5e-11 73.2 102 42.2
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 1.9e-11 72.8 112 42.0
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 1.9e-11 72.8 105 41.0
Potri.007G137300 Populus trichocarpa HOM05D002561 ORTHO05D006466 1.9e-11 72.8 102 42.2
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 2.5e-11 72.4 98 41.8
Aqoxy4G00646 Aquilegia oxysepala HOM05D002561 ORTHO05D006466 3.2e-11 72.0 102 43.1
SGA_v2.0_scaffold70G23496 Striga asiatica HOM05D002561 ORTHO05D006466 5.5e-11 71.2 105 39.0
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 5.5e-11 71.2 108 39.8
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 9.4e-11 70.5 102 40.2
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 9.4e-11 70.5 102 43.1
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 1.2e-10 70.1 105 37.1
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 1.2e-10 70.1 107 40.2
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 2.7e-10 68.9 105 38.1
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis HOM05D002561 ORTHO05D006466 3.6e-10 68.6 111 36.9
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 3.6e-10 68.6 94 43.6
CBR_g34460 Chara braunii HOM05D002561 ORTHO05D006466 8.0e-10 67.4 102 36.3
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 8.0e-10 67.4 102 40.2
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea HOM05D002561 ORTHO05D006466 1.0e-09 67.0 99 41.4
arahy.Tifrunner.gnm1.ann1.UE4GYS Arachis hypogaea HOM05D002561 ORTHO05D006466 1.0e-09 67.0 99 41.4
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 1.8e-09 66.2 109 36.7
PSO478G0717 Papaver somniferum HOM05D002561 ORTHO05D006466 2.3e-09 65.9 96 40.6
Psat6g009760 Pisum sativum HOM05D002561 ORTHO05D006466 4.0e-09 65.1 103 38.8
unitig_85.g27364 Utricularia gibba HOM05D002561 ORTHO05D006466 4.0e-09 65.1 105 39.0
Pp3c9_6000 Physcomitrium patens HOM05D002561 ORTHO05D006466 8.8e-09 63.9 103 36.9
Lj3g0012051 Lotus japonicus HOM05D002561 ORTHO05D006466 2.6e-08 62.4 109 37.6
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 4.4e-08 61.6 104 39.4
A03p58100 Brassica napus HOM05D002561 ORTHO05D006466 4.4e-08 61.6 104 39.4
C07p56220 Brassica napus HOM05D002561 ORTHO05D006466 4.4e-08 61.6 104 39.4
BolC7t46099H Brassica oleracea HOM05D002561 ORTHO05D006466 4.4e-08 61.6 104 39.4
BraA03t14876Z Brassica rapa HOM05D002561 ORTHO05D006466 4.4e-08 61.6 104 39.4
Haze_13235 Corylus avellana HOM05D002561 ORTHO05D006466 4.4e-08 61.6 86 40.7
Haze_13238 Corylus avellana HOM05D002561 ORTHO05D006466 4.4e-08 61.6 86 40.7
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 1.7e-07 59.7 105 36.2
Sabra17G0011900 Salix brachista HOM05D002561 ORTHO05D006466 1.8e-06 56.2 135 31.9
QL08p040074 Quercus lobata HOM05D002561 ORTHO05D006466 2.4e-06 55.8 85 41.2
Cre07.g318702 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D006466 4.1e-06 55.1 105 34.3


User provided reference genes

Program Settings