Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G100900 Prunus persica HOM05D003752 ORTHO05D033805 3.7e-35 151.0 76 100.0
Prupe.1G572500 Prunus persica HOM05D003752 ORTHO05D004537 5.6e-07 57.4 27 92.6
Prupe.5G050000 Prunus persica HOM05D003752 ORTHO05D004537 5.6e-07 57.4 27 92.6
Gohir.A09G119600 Gossypium hirsutum HOM05D003752 ORTHO05D004537 7.3e-07 57.0 29 86.2
Gohir.D09G115800 Gossypium hirsutum HOM05D003752 ORTHO05D004537 7.3e-07 57.0 29 86.2
Gorai.006G134100 Gossypium raimondii HOM05D003752 ORTHO05D004537 7.3e-07 57.0 29 86.2
Actinidia23948 Actinidia chinensis HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
ATR0582G074 Amborella trichopoda HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
Dinv03595 Davidia involucrata HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
FvH4_5g20900 Fragaria vesca HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
FAN08G2370 Fragaria x ananassa HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
FAN13G2688 Fragaria x ananassa HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
FAN18G0564 Fragaria x ananassa HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MBI11_g22235_MAGBIO Magnolia biondii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MBI11_g33762_MAGBIO Magnolia biondii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MBI11_g39266_MAGBIO Magnolia biondii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MBI11_g44896_MAGBIO Magnolia biondii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MD06G1043100 Malus domestica HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MD16G1267700 Malus domestica HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
MD16G1267900 Malus domestica HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
Manes.06G013600 Manihot esculenta HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
Nn3g18377 Nelumbo nucifera HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
RcHm_v2.0_Chr7g0207911 Rosa chinensis HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
TWI53G1524 Tripterygium wilfordii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
TWI74G0240 Tripterygium wilfordii HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
TAR369G0444 Trochodendron aralioides HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
TAR623G0355 Trochodendron aralioides HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
TAR625G1316 Trochodendron aralioides HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
GSVIVG01034188001 Vitis vinifera HOM05D003752 ORTHO05D004537 1.2e-06 56.2 27 88.9
EL10Ac7g16005 Beta vulgaris HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
CSS0023462 Camellia sinensis var. sinensis HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
CSS0045812 Camellia sinensis var. sinensis HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
CSS0049967 Camellia sinensis var. sinensis HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Cfa017397 Carpinus fangiana HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
CiPaw.09G191400 Carya illinoinensis HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
CDE02G1601 Ceratophyllum demersum HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 85.2
AUR62020969 Chenopodium quinoa HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Ciclev10004588m.g Citrus clementina HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
DCAR_014174 Daucus carota HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Dinv01586 Davidia involucrata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Dinv16988 Davidia involucrata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Dinv42937 Davidia involucrata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Dinv43163 Davidia involucrata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Duzib128G1024 Durio zibethinus HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Lj1P155T24 Lonicera japonica HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Lj2A1060T44 Lonicera japonica HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Manes.14G164400 Manihot esculenta HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
PGR042G2871 Punica granatum HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
PGR142G3112 Punica granatum HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
QL05p081022 Quercus lobata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
QL07p048095 Quercus lobata HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Sc09g0009000 Simmondsia chinensis HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
THA.LOC104824422 Tarenaya hassleriana HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Thecc.05G143200 Theobroma cacao HOM05D003752 ORTHO05D004537 1.6e-06 55.8 27 88.9
Aqoxy2G02099 Aquilegia oxysepala HOM05D003752 ORTHO05D004537 2.8e-06 55.1 29 82.8
arahy.Tifrunner.gnm1.ann1.VI8ZWX Arachis hypogaea HOM05D003752 ORTHO05D004537 2.8e-06 55.1 27 85.2
C06p24280 Brassica napus HOM05D003752 ORTHO05D004537 2.8e-06 55.1 30 76.7
CBR_g3460 Chara braunii HOM05D003752 ORTHO05D004537 2.8e-06 55.1 29 75.9
AT3G57150 Arabidopsis thaliana HOM05D003752 ORTHO05D004537 3.6e-06 54.7 30 76.7
CANSAT11G0989 Cannabis sativa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
CANSAT78G1620 Cannabis sativa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
CAN.G809.54 Capsicum annuum HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Cpa.g.sc211.29 Carica papaya HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
AUR62001800 Chenopodium quinoa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Migut.J01786 Erythranthe guttata HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Lsat_1_v5_gn_4_170400 Lactuca sativa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Lj6g0020967 Lotus japonicus HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Nitab4.5_0003602g0040 Nicotiana tabacum HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Nitab4.5_0003902g0040 Nicotiana tabacum HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Potri.006G044100 Populus trichocarpa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Potri.016G041200 Populus trichocarpa HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Sabra06G0030400 Salix brachista HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Sabra16G0044000 Salix brachista HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Sabra16G0047400 Salix brachista HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
THA.LOC104803283 Tarenaya hassleriana HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
THA.LOC104816817 Tarenaya hassleriana HOM05D003752 ORTHO05D004537 3.6e-06 54.7 27 85.2
Haze_02427 Corylus avellana HOM05D003752 ORTHO05D004537 4.7e-06 54.3 26 88.5
Lalb_Chr20g0122851 Lupinus albus HOM05D003752 ORTHO05D004537 4.7e-06 54.3 29 82.8
HPP92_001952 Vanilla planifolia HOM05D003752 ORTHO05D004537 4.7e-06 54.3 27 85.2
BcaB02g07617 Brassica carinata HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
BcaB05g23842 Brassica carinata HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
BcaC03g16360 Brassica carinata HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
BcaC08g44828 Brassica carinata HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
A02p26300 Brassica napus HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
C02p41830 Brassica napus HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
BolC2t10206H Brassica oleracea HOM05D003752 ORTHO05D033805 6.2e-06 53.9 27 81.5
BolC6t37580H Brassica oleracea HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
BraA02t07631Z Brassica rapa HOM05D003752 ORTHO05D004537 6.2e-06 53.9 30 73.3
Ca_03047_v3 Cicer arietinum L. HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
ClCG04G011850 Citrullus lanatus HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
MELO3C002022.2 Cucumis melo HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
CsaV3_1G005920 Cucumis sativus L. HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
FAN04G1343 Fragaria x ananassa HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
PSO339G1844 Papaver somniferum HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 81.5
PSO339G6529 Papaver somniferum HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 81.5
PSO384G2115 Papaver somniferum HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 81.5
Phvul.006G203800 Phaseolus vulgaris HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
Sed0007232 Sechium edule HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
Sed0008799 Sechium edule HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
VMungo0540G0784 Vigna mungo HOM05D003752 ORTHO05D004537 6.2e-06 53.9 27 85.2
Atru.chr1.1259 Acer truncatum HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
MSTRG.6451 Avicennia marina HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
HanXRQChr14g0450101 Helianthus annuus HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
HanXRQChr16g0500001 Helianthus annuus HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
Lsat_1_v5_gn_2_87640 Lactuca sativa HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
Mapoly0138s0004 Marchantia polymorpha HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 77.8
Oeu018008.1 Olea europaea HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
Peaxi162Scf00036g00225 Petunia axillaris HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
Solyc02g081810.4 Solanum lycopersicum HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
Sopen02g026410 Solanum pennellii HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
PGSC0003DMG400007315 Solanum tuberosum HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
SGA_v2.0_scaffold69G23094 Striga asiatica HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5
HPP92_013499 Vanilla planifolia HOM05D003752 ORTHO05D004537 8.1e-06 53.5 27 81.5


User provided reference genes

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