Gene: Sopen02g026410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g026410
  • Transcript Identifier Sopen02g026410.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 49370782-49372545 : positive

Gene Family Information

  • ID HOM05D003752
  • #Genes/#Species 183/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g026410.1

Descriptions

  • Description Encodes a putative pseudouridine synthase (NAP57). | homologue of NAP57 (NAP57) | FUNCTIONS IN: pseudouridine synthase activity | INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing | LOCATED IN: cytosol, nucleolus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain , Pseudouridine synthase/archaeosine transglycosylase-like , Pseudouridine synthase/archaeosine transglycosylase , H/ACA ribonucleoprotein complex, subunit Cbf5 , Pseudouridine synthase II, TruB, N-terminal , Dyskerin-like , Uncharacterised domain 2 | BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
InterProRNA modification
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
InterPropseudouridine synthase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G57150
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G57150
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G57150

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR004802 tRNA pseudouridine synthase B family
IPR002478 PUA domain
IPR004521 Uncharacterised domain CHP00451
IPR015947 PUA-like superfamily
IPR032819 tRNA pseudouridylate synthase B, C-terminal
IPR002501 Pseudouridine synthase II, N-terminal
IPR012960 Dyskerin-like
IPR036974 PUA domain superfamily
Mapman id Description
17.1.1.2.2.1.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5