Gene: Solyc02g081810.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g081810.4
  • Transcript Identifier Solyc02g081810.4.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 43606851-43608816 : positive

Gene Family Information

  • ID HOM05D003752
  • #Genes/#Species 183/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g081810.4.1
  • uniprot A0A3Q7F6H5
  • gene_id Solyc02g081810

Descriptions

  • Description H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 *** A0A2G2XFE0_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:1990481
IBA
GOA DatabasemRNA pseudouridine synthesis
GO:0031118
IBA
GOA DatabaserRNA pseudouridine synthesis
GO:0031120
IBA
GOA DatabasesnRNA pseudouridine synthesis
GO:0000495
IBA
GOA Databasebox H/ACA RNA 3'-end processing
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009982
IBA
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G57150
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G57150
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G57150
GO:0031429
IBA
GOA Databasebox H/ACA snoRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002478 PUA domain
IPR012960 Dyskerin-like
IPR002501 Pseudouridine synthase II, N-terminal
IPR036974 PUA domain superfamily
IPR004802 tRNA pseudouridine synthase B family
IPR015947 PUA-like superfamily
IPR004521 Uncharacterised domain CHP00451
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR032819 tRNA pseudouridylate synthase B, C-terminal
Mapman id Description
17.1.1.2.2.1.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5