Gene: Nitab4.5_0003902g0040
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0003902g0040
- Transcript Identifier Nitab4.5_0003902g0040.1
- Gene Type Coding gene
- Location Nitab4.5_0003902 : 96958-98763 : positive
Gene Family Information
- ID HOM05D003752
- #Genes/#Species 183/98
- Phylogenetic origin
- ID ORTHO05D004537
- #Genes/#Species 177/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0003902g0040.1
- SR1-identifier Nta04g11860.1
Descriptions
- Description Pseudouridine synthase/archaeosine transglycosylase, PUA-like domain, tRNA pseudouridine synthase B family, Dyskerin-like, Pseudouridine synthase, catalytic domain, Uncharacterised domain CHP00451, Pseudouridine synthase II
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G57150 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G57150 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G57150 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002501 | Pseudouridine synthase II, N-terminal |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR015947 | PUA-like superfamily |
| IPR002478 | PUA domain |
| IPR004802 | tRNA pseudouridine synthase B family |
| IPR004521 | Uncharacterised domain CHP00451 |
| IPR012960 | Dyskerin-like |
| IPR036974 | PUA domain superfamily |
| IPR032819 | tRNA pseudouridylate synthase B, C-terminal |
| Mapman id | Description |
|---|---|
| 17.1.1.2.2.1.1 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5 |