Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 3.7e-48 194.5 96 100.0
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 2.3e-45 185.3 96 92.7
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 6.6e-45 183.7 94 92.6
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 6.6e-45 183.7 96 91.7
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.5e-44 182.6 92 96.7
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.9e-44 182.2 96 90.6
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.9e-44 182.2 96 90.6
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.9e-44 182.2 92 95.7
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.9e-44 182.2 92 95.7
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.5e-44 181.8 92 95.7
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 3.3e-44 181.4 95 91.6
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 4.2e-44 181.0 94 92.6
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 87.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 7.2e-44 180.3 92 92.4
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.2e-43 179.5 92 93.5
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.2e-43 179.5 94 90.4
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.2e-43 179.5 92 92.4
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.6e-43 179.1 92 92.4
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 2.1e-43 178.7 92 93.5
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.8e-43 178.3 92 93.5
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.8e-43 178.3 94 90.4
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.6e-43 177.9 96 89.6
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 3.6e-43 177.9 94 89.4
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 3.6e-43 177.9 96 90.6
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 4.7e-43 177.6 92 93.5
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.7e-43 177.6 92 92.4
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 4.7e-43 177.6 94 92.6
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.7e-43 177.6 92 93.5
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.1e-43 177.2 92 93.5
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 6.1e-43 177.2 92 92.4
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 8.0e-43 176.8 92 93.5
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 8.0e-43 176.8 94 90.4
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.0e-42 176.4 92 92.4
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.0e-42 176.4 92 91.3
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.4e-42 176.0 93 93.5
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.4e-42 176.0 96 90.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 5.2e-42 174.1 92 90.2
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 5.2e-42 174.1 92 90.2
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 6.8e-42 173.7 92 91.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.2e-41 172.9 92 91.3
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.2e-41 172.9 96 87.5
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.2e-41 172.9 96 85.4
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.2e-41 172.9 92 90.2
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 2.6e-41 171.8 92 90.2
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.4e-41 171.4 96 86.5
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.4e-41 171.0 91 91.2
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 5.7e-41 170.6 92 88.0
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 5.7e-41 170.6 96 86.5
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 5.7e-41 170.6 86 94.2
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 5.7e-41 170.6 86 94.2
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 7.5e-41 170.2 92 91.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 9.8e-41 169.9 86 94.2
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 9.8e-41 169.9 89 92.1
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 87.4
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.8e-40 168.3 92 90.2
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 84.2
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 3.7e-40 167.9 86 93.0
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.9e-40 167.5 92 87.0
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 4.9e-40 167.5 92 87.0
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 6.3e-40 167.2 96 84.4
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 8.3e-40 166.8 92 88.0
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 8.3e-40 166.8 92 88.0
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.1e-39 166.4 91 89.0
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.1e-39 166.4 84 94.0
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-39 166.0 92 89.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-39 166.0 92 89.1
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.8e-39 165.6 92 87.0
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.4e-39 165.2 123 70.7
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 3.2e-39 164.9 92 85.9
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.2e-39 164.9 92 85.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 4.1e-39 164.5 83 92.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 5.4e-39 164.1 86 90.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.4e-39 164.1 86 91.9
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.4e-39 164.1 86 91.9
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-38 162.9 94 84.0
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 7.8e-38 160.2 104 79.8
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.3e-37 159.5 93 77.4
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.9e-37 157.9 96 83.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.9e-37 157.9 96 83.3
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 8.6e-37 156.8 94 84.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.5e-36 156.0 96 78.1
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.5e-36 156.0 96 78.1
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.5e-36 156.0 85 89.4
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.5e-36 156.0 96 77.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.9e-36 155.6 88 85.2
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.3e-36 154.8 96 77.1
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.3e-36 154.5 92 79.3
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 5.6e-36 154.1 84 89.3
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-35 152.9 84 89.3
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-35 152.9 84 89.3
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-35 152.9 84 89.3
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.6e-35 152.5 100 77.0
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.4e-34 149.4 97 74.2
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 5.2e-34 147.5 89 78.7
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.2e-33 146.4 89 78.7
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.5e-33 146.0 96 74.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.6e-33 145.2 86 76.7
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 6.4e-32 140.6 72 95.8
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 4.1e-31 137.9 75 89.3
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 5.4e-31 137.5 78 84.6
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.6e-30 136.0 72 93.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 2.0e-30 135.6 72 91.7
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 6.0e-30 134.0 76 89.5
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.0e-29 133.3 81 77.8
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.3e-29 132.1 64 95.3
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 5.0e-29 131.0 72 86.1
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.9e-28 129.0 83 77.1
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.3e-28 127.9 100 69.0
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.1e-27 125.6 74 82.4
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 2.1e-27 125.6 69 89.9
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 3.1e-26 121.7 71 80.3
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.2e-25 119.8 66 87.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.5e-25 119.4 86 72.1
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.5e-25 119.4 86 72.1
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.0e-25 119.0 67 80.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.6e-25 118.6 92 67.4
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 7.5e-25 117.1 73 76.7
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 8.3e-24 113.6 72 75.0
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 4.3e-20 101.3 83 56.6
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.6e-19 99.4 92 58.7
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 3.6e-19 98.2 85 52.9
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 8.9e-18 93.6 60 75.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 8.9e-18 93.6 45 93.3
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.4e-17 91.7 51 88.2
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.6e-14 82.8 53 71.7
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 7.8e-14 80.5 85 48.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 3.0e-13 78.6 43 86.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 8.6e-13 77.0 45 82.2
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.2e-08 62.4 39 76.9
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 9.3e-07 57.0 96 39.6
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.5e-06 55.1 34 76.5
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.6e-06 54.7 96 38.5
CAN.G1080.4 Capsicum annuum HOM05D000052 ORTHO05D000963 7.8e-06 53.9 47 61.7


User provided reference genes

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