Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 2311.6 1367 100.0
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1668.7 1391 74.3
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1656.0 1380 72.8
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1583.5 1386 72.8
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1534.2 1398 70.6
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1520.8 1419 69.1
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1509.6 1422 68.6
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1508.8 1423 70.1
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1505.0 1451 68.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1459.1 1392 66.8
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1434.1 1399 66.6
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1370.9 1381 61.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1342.0 1419 62.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1337.4 1445 61.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1336.6 1388 57.6
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1327.8 1410 61.7
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1318.5 1396 60.8
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1312.4 1386 58.2
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1297.3 1412 60.6
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1295.8 1411 61.4
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1276.5 1405 61.0
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1275.4 1403 58.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1274.2 1333 61.6
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1251.5 1399 59.8
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1250.3 1400 59.6
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1250.0 1397 58.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1247.3 1412 60.0
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1238.8 1396 57.3
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1220.7 1401 56.9
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1218.8 1406 56.7
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1218.0 1402 59.2
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1210.3 1446 58.0
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1209.5 1392 56.9
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1206.8 1432 58.4
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1204.9 1387 57.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1201.0 1473 55.4
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1199.9 1464 57.5
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1196.0 1406 57.3
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1194.9 1399 55.8
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1193.3 1388 57.4
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1193.3 1392 56.8
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1192.2 1383 56.1
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1184.1 1409 56.1
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1181.4 1414 56.3
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1179.5 1421 56.1
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1176.8 1418 55.6
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1176.8 1384 55.3
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1175.6 1385 55.8
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1175.2 1393 55.1
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1174.5 1385 55.4
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1171.8 1398 57.1
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1171.0 1534 52.9
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1167.5 1401 56.3
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1148.3 1387 55.1
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1139.0 1398 53.4
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 0.0e+00 1120.1 1421 57.2
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1115.1 1381 54.4
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1107.8 1406 54.8
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1105.9 1232 61.3
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 0.0e+00 1101.3 1429 53.5
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1096.3 1396 53.8
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1082.4 1252 56.1
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 0.0e+00 1076.2 1390 52.2
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 0.0e+00 1075.8 1072 59.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.6e-309 1065.1 1385 54.1
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.4e-305 1053.5 1445 57.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.9e-302 1043.1 1384 50.7
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 2.1e-301 1039.6 1231 57.8
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 2.1e-301 1039.6 1388 51.9
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.6e-290 1003.4 1195 51.8
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 2.0e-288 996.5 1269 51.2
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.8e-284 983.4 1455 47.4
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 1.1e-283 980.7 934 60.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.6e-283 978.4 1261 51.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 7.4e-283 978.0 1429 47.8
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.1e-281 974.2 1414 48.5
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.4e-281 973.8 1421 48.3
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 1.8e-281 973.4 1198 53.7
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.4e-281 973.0 1437 48.4
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 4.9e-279 965.3 1448 45.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 8.4e-279 964.5 1431 47.1
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.4e-278 963.8 1444 46.7
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 3.2e-278 962.6 958 56.9
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 5.5e-278 961.8 1391 48.6
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.0e-276 957.6 914 58.5
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 2.8e-274 949.5 1453 46.9
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.3e-271 940.6 1453 46.7
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.6e-269 932.2 1539 46.4
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.0e-268 929.5 793 66.1
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 7.4e-267 924.9 1523 46.6
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 4.2e-262 909.1 1398 45.5
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 9.7e-259 897.9 1429 44.6
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 2.2e-258 896.7 1425 45.0
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 8.2e-258 894.8 1374 43.0
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-257 894.0 1419 44.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-257 894.0 1419 44.7
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 4.1e-257 892.5 1423 44.6
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.5e-256 889.0 1459 44.9
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.3e-255 887.5 1402 48.9
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.6e-253 880.6 1240 45.2
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.8e-247 859.4 1104 55.7
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 5.3e-241 839.0 1401 45.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 4.8e-234 815.8 1421 46.7
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.7e-231 807.4 1396 46.9
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.6e-229 799.7 840 56.8
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 4.7e-229 799.3 1406 44.0
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 2.0e-227 793.9 1226 45.8
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.3e-226 791.2 927 52.9
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-224 784.3 1399 48.3
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.1e-221 772.3 1052 54.5
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.0e-220 769.6 1373 39.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 8.6e-215 751.9 1072 46.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 4.3e-214 749.6 1412 43.6
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 5.4e-209 732.6 1413 43.9
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.9e-201 707.6 543 69.8
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-198 698.0 1155 44.9
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.0e-183 647.1 802 50.4
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.3e-181 641.7 1411 39.1
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.2e-176 625.2 1246 38.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.9e-150 538.1 1263 36.8
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 2.8e-149 534.3 1304 37.3
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.0e-147 528.1 1261 40.4
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.9e-146 524.2 1321 36.4
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 8.8e-143 512.7 900 52.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.0e-132 476.5 1398 34.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.1e-120 438.3 479 52.0
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.9e-114 417.9 319 67.1
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.1e-105 389.4 1433 33.1
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.2e-104 386.0 1405 31.3
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.7e-98 365.5 1023 32.6
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.5e-97 361.7 550 42.9
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.4e-94 351.3 1224 31.0
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.5e-91 341.3 402 49.8
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.6e-78 298.5 1297 33.1
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 2.1e-75 288.9 449 45.2
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.0e-74 286.6 1006 30.2
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.3e-74 286.2 1003 29.5
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 6.2e-72 277.3 867 30.7
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.2e-69 268.9 512 41.4
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 2.1e-67 262.3 906 30.0
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.5e-65 255.4 1028 29.3
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 7.1e-60 237.3 214 61.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.6e-59 234.6 214 63.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 5.1e-58 231.1 212 58.5
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.1e-55 223.4 999 27.5
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 5.8e-54 217.6 869 28.5
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.9e-53 215.3 341 39.9
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.9e-53 215.3 688 29.9
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 1.9e-52 212.6 575 52.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.5e-49 202.2 1102 25.9
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 9.6e-49 200.3 929 26.5
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 4.5e-46 191.4 258 44.6
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 2.9e-45 188.7 191 55.0
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-43 183.3 695 28.3
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 2.1e-43 182.6 498 31.1
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 3.0e-42 178.7 282 41.1
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.5e-41 176.4 720 26.1
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 3.3e-41 175.3 1110 24.5
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.6e-35 156.4 831 26.1
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.3e-34 152.5 1024 23.2
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.1e-33 150.2 1075 24.4
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.3e-31 141.4 201 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.4e-28 133.3 963 23.6
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.7e-27 129.0 132 57.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 3.9e-26 125.2 84 66.7
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-24 120.2 245 43.3
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.4e-23 116.7 129 46.5
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 3.5e-22 112.1 152 44.1
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 6.1e-19 101.3 161 31.7
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 1.0e-18 100.5 90 56.7
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 9.7e-17 94.0 88 51.1
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.2e-13 82.8 86 45.3
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 2.1e-11 76.3 365 29.6
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.0e-10 72.0 394 32.0
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.6e-09 69.3 231 29.0
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 4.4e-09 68.6 69 55.1
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.7e-08 65.5 133 32.3
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-07 63.5 58 53.4
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 4.1e-07 62.0 52 55.8
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 1.2e-06 60.5 78 44.9
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.7e-06 59.3 61 50.8


User provided reference genes

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