Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 5.7e-116 421.0 224 100.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.7e-94 349.0 226 81.4
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.4e-93 346.7 226 77.9
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 4.4e-92 341.7 224 76.8
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 9.2e-90 334.0 219 76.7
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.5e-89 332.0 217 77.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.7e-83 313.2 222 71.6
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.8e-78 295.8 221 68.8
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.4e-77 293.5 221 67.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 2.3e-77 292.7 221 67.4
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.3e-77 292.7 221 66.1
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 2.0e-76 289.7 222 67.1
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 4.4e-76 288.5 221 64.7
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.7e-75 286.6 221 65.6
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 2.9e-75 285.8 221 67.0
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-75 285.8 221 66.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.9e-75 285.0 221 66.1
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.1e-74 283.9 221 66.5
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-74 281.2 221 65.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.2e-73 280.4 222 65.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.2e-73 280.4 221 66.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.6e-73 280.0 187 75.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.0e-73 278.1 221 64.7
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.0e-73 278.1 221 64.7
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.0e-73 278.1 221 64.7
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-72 277.3 221 64.7
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-72 276.6 221 63.3
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 221 64.3
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 221 64.3
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.3e-72 276.2 221 63.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 221 64.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.6e-72 274.2 221 63.8
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.1e-71 273.9 221 64.3
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.9e-71 273.1 208 67.8
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.6e-71 271.6 222 63.1
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 6.2e-70 268.1 221 62.0
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.1e-69 267.3 222 63.5
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 4.0e-69 265.4 221 61.1
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 4.0e-69 265.4 222 63.1
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.8e-69 264.6 222 62.2
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 6.8e-69 264.6 221 62.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.6e-68 262.7 220 62.7
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 5.8e-68 261.5 221 60.6
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 7.5e-68 261.2 223 60.5
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.7e-67 260.0 222 60.4
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.9e-67 259.2 221 58.4
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 4.9e-67 258.5 221 61.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.1e-66 257.3 223 60.5
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.1e-66 257.3 223 61.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.4e-66 256.9 222 60.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.4e-66 256.1 222 59.9
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 3.2e-66 255.8 221 58.4
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 4.1e-66 255.4 223 61.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 5.4e-66 255.0 223 59.6
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 7.1e-66 254.6 221 58.8
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.1e-66 254.6 221 58.8
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 7.1e-66 254.6 220 62.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 9.2e-66 254.2 223 58.3
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.2e-65 253.8 222 58.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.2e-65 253.8 221 57.9
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.6e-65 253.4 221 57.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.6e-65 253.4 221 57.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 2.7e-65 252.7 221 58.8
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.7e-65 252.7 223 59.2
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 3.5e-65 252.3 223 60.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 4.6e-65 251.9 222 59.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 7.8e-65 251.1 221 58.8
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 7.8e-65 251.1 221 57.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 7.8e-65 251.1 223 61.0
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.3e-64 250.4 221 57.0
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.7e-64 250.0 223 59.6
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.3e-64 249.6 223 57.8
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 3.0e-64 249.2 222 59.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.9e-64 248.8 223 58.3
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 5.1e-64 248.4 221 61.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 5.1e-64 248.4 223 57.8
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 2.5e-63 246.1 229 55.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.5e-63 246.1 248 55.2
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.2e-62 243.8 221 59.7
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.1e-62 243.0 235 55.3
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.2e-62 241.5 222 58.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.8e-61 240.0 221 58.4
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 3.1e-61 239.2 221 57.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 3.1e-61 239.2 223 56.5
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 4.0e-61 238.8 223 58.3
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 2.6e-60 236.1 207 61.4
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 5.8e-60 235.0 221 57.5
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 9.9e-60 234.2 231 51.9
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.2e-59 233.0 221 57.5
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.9e-59 232.6 223 57.0
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.7e-59 232.3 198 62.6
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.9e-58 229.9 184 65.8
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-58 229.2 183 64.5
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 7.1e-58 228.0 224 55.8
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 9.2e-58 227.6 222 56.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 6.0e-57 224.9 221 57.5
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.0e-56 224.2 219 53.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.1e-56 221.9 230 52.2
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.1e-56 221.9 222 56.3
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.1e-55 220.7 221 52.9
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 9.6e-55 217.6 221 52.9
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.1e-54 216.5 221 53.8
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.6e-54 215.7 169 65.7
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 6.2e-54 214.9 199 58.3
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 8.1e-54 214.5 238 52.5
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 6.8e-53 211.5 258 51.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 8.9e-53 211.1 221 52.9
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.5e-52 210.3 228 50.9
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.0e-52 209.9 228 50.4
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 4.4e-52 208.8 195 60.5
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.7e-51 206.8 202 56.9
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.7e-51 206.8 192 56.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 8.4e-51 204.5 192 56.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.4e-50 203.8 252 49.2
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.9e-50 203.4 192 57.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 5.4e-50 201.8 345 39.1
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 7.1e-50 201.4 267 44.6
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 7.1e-50 201.4 135 74.8
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.0e-48 196.1 257 45.5
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.9e-47 193.4 215 54.0
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-46 190.3 157 63.7
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.4e-45 187.2 188 56.9
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 6.9e-45 184.9 253 44.3
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 7.1e-42 174.9 149 61.1
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 4.6e-41 172.2 199 49.7
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-41 171.4 148 61.5
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.1e-38 163.3 142 64.1
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.1e-38 163.3 170 53.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.9e-35 152.1 128 63.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.2e-33 147.5 137 58.4
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 5.1e-32 142.1 134 59.7
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 4.3e-31 139.0 176 46.0
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 4.8e-30 135.6 147 50.3
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.6e-28 129.8 99 68.7
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-27 127.9 96 64.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.0e-27 127.9 171 46.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.0e-24 116.3 185 40.5
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.1e-23 114.4 125 50.4
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 3.3e-23 112.8 200 36.5
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.3e-22 110.9 181 35.9
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.1e-21 106.3 195 35.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.2e-18 96.3 95 51.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.2e-17 94.4 93 53.8
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 6.1e-17 92.0 154 41.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.0e-16 89.7 94 51.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.5e-15 87.4 58 65.5
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 5.7e-15 85.5 94 48.9
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.6e-12 76.6 50 74.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.1e-10 71.2 53 67.9
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 7.9e-09 65.1 118 36.4
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.2e-06 57.0 166 31.3
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 6.3e-06 55.5 171 25.7


User provided reference genes

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