Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1602.0 809 100.0
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1374.4 808 85.3
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1282.7 808 80.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1260.0 809 78.9
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1243.8 807 78.6
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1241.1 807 78.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1224.5 807 77.9
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1176.4 812 75.2
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1173.7 807 73.4
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1171.8 811 73.1
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1163.3 809 72.1
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1154.8 814 71.1
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1152.5 811 71.4
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1147.1 814 70.9
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1144.4 807 72.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1144.0 809 71.3
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1142.5 814 70.8
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1141.3 812 71.7
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1141.3 810 71.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1130.9 813 70.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1128.6 823 70.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1125.2 807 71.7
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1122.8 814 69.8
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1099.0 810 69.3
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1088.2 871 66.5
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1084.3 809 67.9
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1082.0 812 68.7
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 0.0e+00 1080.9 823 67.4
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 0.0e+00 1080.9 814 67.7
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1080.1 811 67.2
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1077.4 832 66.7
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 0.0e+00 1076.2 824 67.6
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 4.2e-310 1067.8 796 67.8
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.5e-307 1059.3 790 68.9
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.7e-303 1045.8 800 67.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 8.5e-303 1043.5 791 68.5
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 7.9e-301 1036.9 807 66.7
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.3e-300 1036.2 815 65.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.3e-300 1035.4 814 66.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 5.7e-299 1030.8 808 66.5
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.2e-298 1028.9 816 65.7
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 8.2e-298 1026.9 815 65.9
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.8e-297 1025.8 798 66.5
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.8e-297 1025.8 807 66.0
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 815 65.8
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.3e-297 1024.2 824 64.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.6e-296 1021.9 821 67.4
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.5e-296 1021.1 824 64.3
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 7.7e-296 1020.4 814 64.9
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 3.8e-295 1018.1 731 71.0
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 5.0e-295 1017.7 796 65.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.4e-294 1016.1 806 64.8
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.9e-294 1015.8 814 64.3
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.8e-292 1009.2 836 63.5
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 4.4e-291 1004.6 789 66.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 793 64.9
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.8e-290 1001.9 780 66.3
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.3e-290 1000.7 810 64.0
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 8.2e-290 1000.3 789 64.9
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.1e-289 1000.0 812 63.9
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.4e-289 998.8 796 64.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 3.1e-289 998.4 785 64.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 5.3e-289 997.7 796 64.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.2e-288 996.5 790 66.2
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 7.7e-288 993.8 806 64.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.7e-287 992.6 813 63.7
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.5e-287 990.7 814 66.2
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.9e-284 981.5 619 81.1
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.9e-284 981.5 619 81.1
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 5.7e-283 977.6 814 62.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.3e-282 976.5 810 61.5
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 2.6e-280 968.8 812 61.3
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 3.5e-280 968.4 810 61.2
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 5.9e-280 967.6 815 61.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.3e-279 966.5 810 61.0
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.2e-279 965.7 736 67.5
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 2.5e-278 962.2 810 60.6
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 4.2e-278 961.4 810 61.1
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 9.4e-278 960.3 838 59.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.8e-276 953.7 620 79.0
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 9.1e-273 943.7 812 60.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-272 943.3 819 60.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.2e-269 933.3 820 62.3
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.5e-262 909.1 810 58.8
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.2e-262 908.3 614 74.6
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.2e-259 900.2 701 66.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 7.5e-259 897.5 808 58.4
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.9e-258 894.8 848 59.3
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.3e-255 885.9 920 52.6
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 5.6e-254 881.3 797 58.7
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.9e-234 815.8 762 57.1
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 7.1e-233 811.2 589 70.5
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 2.6e-227 792.7 618 66.8
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.4e-217 760.4 623 63.6
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.1e-214 750.7 717 53.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 4.0e-196 689.1 797 49.4
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.9e-193 680.2 768 48.6
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.1e-190 671.0 812 45.1
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.1e-182 644.4 712 49.0
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.1e-176 623.6 547 60.7
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.0e-162 575.9 482 63.3
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.2e-158 564.7 404 70.8
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.7e-157 559.7 549 53.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.7e-152 543.5 472 56.1
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 4.0e-151 539.7 395 71.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 5.7e-142 509.2 331 74.9
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.2e-132 475.3 394 63.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.5e-129 467.2 344 69.5
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-128 464.5 341 69.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.1e-127 461.8 776 37.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.9e-117 426.4 778 36.4
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 7.3e-113 412.5 779 35.2
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 5.3e-103 379.8 481 49.3
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.4e-94 350.5 457 42.7
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.4e-93 345.9 258 67.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.6e-86 324.3 247 66.0
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.4e-86 323.9 295 60.0
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.2e-78 298.9 860 29.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.1e-74 283.5 183 72.7
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.3e-73 280.8 189 71.4
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.3e-72 278.9 379 46.7
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.5e-68 264.6 324 46.3
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 3.6e-67 260.8 177 75.7
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-64 251.5 305 45.9
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.5e-62 245.4 228 53.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.4e-57 226.5 144 73.6
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 4.1e-47 194.1 233 54.1
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-46 192.2 173 62.4
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.1e-44 186.0 173 60.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.5e-44 185.7 160 61.9
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.8e-40 170.6 140 65.0
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.8e-39 168.7 215 43.3
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.0e-37 162.9 150 59.3
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.4e-33 147.5 255 38.8
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-22 112.8 102 52.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.3e-16 92.8 867 21.0
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 6.6e-13 80.5 71 57.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 8.6e-13 80.1 402 23.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.3e-10 72.0 67 53.7
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 1.2e-09 69.7 36 91.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-07 62.8 43 69.8


User provided reference genes

Program Settings