Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 2.5e-64 248.4 112 100.0
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 1.5e-61 239.2 112 94.6
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 1.3e-44 183.0 112 70.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 68.8
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 4.5e-37 157.9 108 63.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.3e-36 156.4 108 63.0
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 2.2e-36 155.6 108 62.0
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.4e-35 152.9 108 62.0
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.2e-35 151.8 108 61.1
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 5.5e-35 151.0 108 61.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 5.5e-35 151.0 108 61.1
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.2e-34 149.8 108 60.2
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 7.9e-34 147.1 108 59.3
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 7.9e-34 147.1 108 59.3
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 7.9e-34 147.1 110 59.1
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 3.0e-33 145.2 108 57.4
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 3.9e-33 144.8 108 58.3
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 3.9e-33 144.8 108 58.3
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 1.5e-32 142.9 108 58.3
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.5e-32 142.9 108 59.3
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.0e-32 142.5 108 60.2
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 4.4e-32 141.4 108 58.3
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.4e-32 141.4 109 56.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 56.4
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 9.7e-32 140.2 108 60.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.4e-30 136.3 108 56.5
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 1.4e-30 136.3 108 53.7
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.8e-30 136.0 109 57.8
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.2e-29 133.3 109 56.9
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 109 59.6
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 54.6
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.5e-29 132.9 108 51.9
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.5e-29 132.9 108 53.7
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.5e-29 132.9 108 53.7
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 2.0e-29 132.5 107 55.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.0e-29 132.5 108 51.9
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 2.6e-29 132.1 113 53.1
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-29 131.7 109 53.2
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-29 131.7 109 53.2
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-29 131.7 109 53.2
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-29 131.7 109 53.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.9e-29 131.0 108 56.5
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 7.7e-29 130.6 114 52.6
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.0e-28 130.2 110 55.5
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.3e-28 129.8 108 51.9
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.7e-28 129.4 108 53.7
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 57.8
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 2.2e-28 129.0 109 53.2
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.2e-28 129.0 109 53.2
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 3.8e-28 128.3 107 53.3
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 3.8e-28 128.3 108 53.7
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 5.0e-28 127.9 107 53.3
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.0e-28 127.9 109 55.0
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.0e-28 127.9 109 55.0
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 5.0e-28 127.9 109 53.2
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 6.5e-28 127.5 107 53.3
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 8.5e-28 127.1 107 53.3
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 55.0
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 55.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 54.1
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 8.5e-28 127.1 101 54.5
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.1e-27 126.7 109 54.1
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 109 54.1
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.4e-27 126.3 107 52.3
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.9e-27 125.9 97 58.8
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 2.5e-27 125.6 107 51.4
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.2e-27 125.2 108 50.0
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 9.4e-27 123.6 111 55.9
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 9.4e-27 123.6 110 54.5
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.6e-26 122.9 107 50.5
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-26 122.9 107 50.5
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 1.6e-26 122.9 111 54.1
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 2.1e-26 122.5 87 60.9
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-26 122.5 109 53.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 2.1e-26 122.5 108 49.1
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 6.1e-26 120.9 107 50.5
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 8.0e-26 120.6 108 50.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.4e-25 119.8 107 49.5
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.8e-25 119.4 108 52.8
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.1e-24 116.7 107 51.4
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 5.7e-24 114.4 110 49.1
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 9.7e-24 113.6 100 57.0
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.3e-23 113.2 99 58.6
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.3e-23 113.2 107 47.7
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 3.7e-23 111.7 86 57.0
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 3.1e-22 108.6 112 51.8
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 9.1e-22 107.1 100 48.0
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 48.6
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 48.6
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 7.7e-21 104.0 109 46.8
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.3e-20 103.2 109 50.5
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 48.6
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 2.2e-20 102.4 109 47.7
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.2e-20 102.4 109 45.0
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 6.5e-20 100.9 107 43.0
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 8.5e-20 100.5 135 45.2
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 4.2e-19 98.2 68 60.3
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 9.4e-19 97.1 109 45.9
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.2e-18 96.7 66 63.6
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.6e-18 96.3 110 48.2
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.0e-17 93.6 108 43.5
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.8e-17 90.5 71 54.9
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 2.6e-16 89.0 107 40.2
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 2.6e-16 89.0 69 59.4
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 2.8e-15 85.5 68 51.5
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.8e-14 82.8 55 67.3
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.8e-14 82.8 66 57.6
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 3.1e-14 82.0 71 53.5
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 4.1e-14 81.6 109 37.6
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 7.7e-13 77.4 69 59.4
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 1.9e-11 72.8 87 39.1
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 8.0e-10 67.4 67 43.3
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.8e-08 60.5 124 29.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-07 60.1 124 29.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.8e-07 58.9 124 29.0
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.3e-07 57.4 123 29.3
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 8.3e-07 57.4 123 28.5
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-06 57.0 123 27.6
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-06 57.0 123 27.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-06 57.0 115 31.3
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-06 57.0 123 27.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-06 57.0 115 31.3
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.1e-06 57.0 114 29.8
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.4e-06 56.6 123 27.6
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.4e-06 56.6 114 29.8
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 1.8e-06 56.2 115 31.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 1.8e-06 56.2 115 31.3
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 1.8e-06 56.2 115 31.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 1.8e-06 56.2 115 31.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 4.1e-06 55.1 112 31.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.1e-06 55.1 107 29.9
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 4.1e-06 55.1 115 29.6
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 5.4e-06 54.7 115 28.7
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.4e-06 54.7 111 27.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 7.0e-06 54.3 114 30.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 7.0e-06 54.3 114 30.7
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 9.1e-06 53.9 124 29.8


User provided reference genes

Program Settings