Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 8.5e-142 506.9 240 100.0
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 7.5e-106 387.5 208 89.4
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 5.9e-103 377.9 209 87.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.7e-98 361.3 204 82.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 3.1e-96 355.5 207 79.7
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 5.9e-95 351.3 205 79.0
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.9e-95 351.3 201 82.6
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.0e-94 350.5 204 80.4
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.9e-93 346.3 210 76.2
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.3e-93 345.5 209 77.5
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.3e-93 345.1 204 78.4
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 5.6e-93 344.7 204 77.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.6e-92 343.2 206 77.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.1e-92 342.8 199 80.4
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.8e-92 342.4 209 77.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.7e-92 341.7 209 77.5
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.7e-92 341.7 209 77.5
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.3e-91 339.3 210 77.1
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.3e-91 339.3 206 75.7
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.3e-91 339.3 206 77.2
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 4.0e-91 338.6 206 73.8
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.0e-91 338.6 206 75.2
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 5.2e-91 338.2 205 75.6
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 6.8e-91 337.8 206 76.2
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 8.9e-91 337.4 217 71.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 8.9e-91 337.4 205 75.6
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.5e-90 336.7 228 71.1
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.5e-90 336.7 209 75.6
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.6e-90 335.9 206 73.8
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 4.4e-90 335.1 206 75.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 4.4e-90 335.1 204 76.5
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.4e-90 335.1 206 74.8
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 9.8e-90 334.0 206 74.3
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.3e-89 333.6 187 80.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 4.9e-89 331.6 206 72.8
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 4.9e-89 331.6 204 75.5
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 8.3e-89 330.9 203 75.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.1e-88 330.5 206 72.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.1e-88 330.5 206 74.8
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 2.4e-88 329.3 206 73.8
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 5.4e-88 328.2 214 70.1
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 5.4e-88 328.2 211 70.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.2e-88 327.4 204 75.0
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 9.2e-88 327.4 204 75.0
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.2e-87 327.0 206 73.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-87 327.0 203 73.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-87 327.0 203 73.9
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-87 326.2 220 70.5
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.0e-87 326.2 205 73.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.0e-86 323.9 207 72.0
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.0e-86 323.9 184 76.6
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.3e-86 323.6 184 76.6
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.7e-86 323.2 183 79.2
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.7e-86 323.2 216 69.9
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.3e-86 322.8 186 78.5
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 3.0e-86 322.4 217 68.7
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 3.0e-86 322.4 186 79.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.0e-86 322.4 199 75.4
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.0e-86 322.4 210 71.4
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.9e-86 322.0 215 70.2
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 3.9e-86 322.0 199 75.4
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 5.0e-86 321.6 209 69.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.6e-86 321.2 209 69.9
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 8.6e-86 320.9 209 70.3
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-85 320.5 217 69.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.5e-85 320.1 206 69.9
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.5e-85 320.1 206 69.9
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 3.3e-85 318.9 209 69.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.3e-85 318.5 204 73.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.3e-85 317.8 204 71.6
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.5e-85 317.4 205 73.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-84 316.6 214 66.4
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.6e-84 316.6 206 68.9
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.6e-84 316.6 211 68.7
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.6e-84 316.6 211 68.7
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.8e-84 315.8 206 68.9
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.0e-83 313.9 203 70.0
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-83 313.2 206 68.0
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.3e-83 312.8 197 71.6
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 3.1e-83 312.4 207 67.6
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 3.1e-83 312.4 191 71.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 3.1e-83 312.4 209 68.4
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 5.2e-83 311.6 207 67.6
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 8.9e-83 310.8 191 71.2
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.3e-81 307.0 184 74.5
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.7e-81 305.4 178 80.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.7e-81 305.4 202 68.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 6.4e-81 304.7 205 69.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.4e-80 302.8 175 77.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.4e-80 302.8 207 67.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 3.2e-80 302.4 208 67.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.1e-80 302.0 178 78.1
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 9.2e-80 300.8 204 67.2
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.0e-79 299.7 154 86.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.8e-79 297.7 181 74.0
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.0e-78 297.4 206 65.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-76 290.4 252 56.0
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 4.7e-76 288.5 214 65.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.1e-75 285.8 328 48.2
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.2e-75 285.0 255 54.9
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.4e-74 282.3 183 72.7
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 7.5e-74 281.2 206 62.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.7e-73 278.9 176 69.3
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.6e-71 273.5 220 57.3
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.5e-69 266.9 184 66.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.2e-68 263.8 171 67.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 8.4e-65 251.1 206 59.7
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.1e-63 246.5 204 61.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.7e-63 246.1 132 83.3
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 6.0e-63 245.0 205 60.0
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 7.3e-61 238.0 126 81.0
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 4.0e-59 232.3 198 54.0
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.0e-58 229.9 174 58.0
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 9.9e-58 227.6 173 64.2
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.0e-54 216.1 215 47.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 4.6e-47 192.2 123 72.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 5.1e-46 188.7 145 62.1
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 4.0e-43 179.1 133 63.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 4.0e-43 179.1 133 63.9
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.2e-39 167.5 83 90.4
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.8e-38 163.7 128 53.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.5e-29 134.0 212 40.6
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 9.7e-29 131.3 75 78.7
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 8.7e-22 108.2 74 73.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 4.3e-21 105.9 197 32.0


User provided reference genes

Program Settings